Wall clock time and date at job start Mon Mar 30 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31167 * 125.85225 * 2 1 4 4 N 1.40319 * 108.32434 * 179.97438 * 3 2 1 5 5 C 1.37393 * 126.18192 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00596 * 186.70523 * 5 4 3 7 7 C 1.38989 * 119.99799 * 6.70064 * 5 4 3 8 8 N 1.31291 * 120.00128 * 181.92476 * 7 5 4 9 9 Si 1.86798 * 120.00103 * 1.93225 * 7 5 4 10 10 H 1.48495 * 109.47359 * 179.97438 * 9 7 5 11 11 H 1.48509 * 109.47172 * 299.99428 * 9 7 5 12 12 H 1.48502 * 109.47502 * 59.99327 * 9 7 5 13 13 C 1.35634 * 107.64030 * 0.33338 * 4 3 2 14 14 C 1.35666 * 107.71862 * 359.47877 * 13 4 3 15 15 C 1.50844 * 124.08319 * 180.30583 * 14 13 4 16 16 H 1.09004 * 109.68514 * 257.12252 * 15 14 13 17 17 N 1.46906 * 109.68265 * 136.60596 * 15 14 13 18 18 C 1.53361 * 108.38327 * 16.84742 * 15 14 13 19 19 C 1.53108 * 109.51613 * 310.04458 * 18 15 14 20 20 C 1.50797 * 128.09674 * 180.19785 * 13 4 3 21 21 H 1.09004 * 109.47254 * 90.02697 * 1 2 3 22 22 H 1.09001 * 109.47321 * 210.02545 * 1 2 3 23 23 H 1.08991 * 109.47640 * 330.03062 * 1 2 3 24 24 H 0.96998 * 119.99507 * 354.76250 * 8 7 5 25 25 H 1.00901 * 111.00050 * 179.97438 * 17 15 14 26 26 H 1.00900 * 111.00097 * 303.95379 * 17 15 14 27 27 H 1.09007 * 109.46305 * 70.05019 * 18 15 14 28 28 H 1.08993 * 109.46677 * 190.03695 * 18 15 14 29 29 H 1.09000 * 109.46854 * 190.25625 * 19 18 15 30 30 H 1.09004 * 109.46832 * 310.23931 * 19 18 15 31 31 H 1.08994 * 109.90452 * 76.37896 * 20 13 4 32 32 H 1.09000 * 109.52551 * 315.77351 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0631 0.0000 4 7 3.6133 0.6405 0.0006 5 6 4.7207 1.4537 0.0013 6 1 5.7059 1.0247 -0.1075 7 6 4.5732 2.8286 0.1419 8 7 5.6281 3.6093 0.1047 9 14 2.8740 3.5657 0.3840 10 1 2.9874 5.0412 0.5076 11 1 2.0182 3.2306 -0.7825 12 1 2.2653 3.0113 1.6199 13 6 3.6160 -0.7158 -0.0066 14 6 2.3245 -1.1313 0.0003 15 6 1.9024 -2.5794 0.0022 16 1 1.5747 -2.8678 -0.9966 17 7 0.8041 -2.7734 0.9584 18 6 3.1065 -3.4336 0.4174 19 6 4.3259 -3.0404 -0.4208 20 6 4.8045 -1.6439 -0.0049 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5133 24 1 6.5162 3.2223 0.0555 25 1 0.5054 -3.7370 0.9754 26 1 1.0678 -2.4598 1.8805 27 1 3.3228 -3.2679 1.4729 28 1 2.8782 -4.4868 0.2545 29 1 5.1265 -3.7621 -0.2583 30 1 4.0537 -3.0317 -1.4763 31 1 5.2400 -1.6873 0.9934 32 1 5.5487 -1.2841 -0.7154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082826035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:29 Heat of formation + Delta-G solvation = 26.978991 kcal Electronic energy + Delta-G solvation = -15503.820451 eV Core-core repulsion = 13077.648328 eV Total energy + Delta-G solvation = -2426.172123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14555 -37.97539 -35.88820 -34.71217 -32.86831 -30.24694 -29.64267 -28.41555 -25.70087 -23.40276 -22.51084 -21.53899 -19.58963 -19.50981 -17.52316 -16.81862 -16.07184 -15.63494 -15.37492 -15.05604 -14.79111 -14.68345 -14.29327 -13.81109 -13.67461 -13.40829 -12.97098 -12.88299 -12.44467 -12.40061 -12.03423 -11.95683 -11.77505 -11.50201 -11.42061 -10.34386 -10.00382 -9.38876 -9.34007 -9.09227 -6.52725 1.11338 1.44798 1.68447 1.86494 2.07901 2.27545 2.39756 2.85827 3.77466 3.94248 3.96973 4.06649 4.36649 4.41653 4.53567 4.56708 4.69363 4.82708 4.93992 4.94540 5.00892 5.08966 5.15962 5.26399 5.31860 5.43840 5.46664 5.60759 5.92470 6.20369 6.40391 6.53084 6.88100 7.13974 7.38439 8.08918 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032923 B = 0.011891 C = 0.009024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.273033 B = 2354.081327 C = 3102.116859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.040 3.960 3 N -0.406 5.406 4 N -0.196 5.196 5 C -0.397 4.397 6 H 0.102 0.898 7 C 0.004 3.996 8 N -0.868 5.868 9 Si 1.162 2.838 10 H -0.312 1.312 11 H -0.282 1.282 12 H -0.295 1.295 13 C -0.002 4.002 14 C -0.262 4.262 15 C 0.189 3.811 16 H 0.077 0.923 17 N -0.836 5.836 18 C -0.140 4.140 19 C -0.098 4.098 20 C -0.039 4.039 21 H 0.067 0.933 22 H 0.115 0.885 23 H 0.049 0.951 24 H 0.276 0.724 25 H 0.351 0.649 26 H 0.339 0.661 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -15.075 0.955 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.114 4.114 3 N -0.240 5.240 4 N 0.039 4.961 5 C -0.527 4.527 6 H 0.120 0.880 7 C -0.205 4.205 8 N -0.498 5.498 9 Si 0.993 3.007 10 H -0.243 1.243 11 H -0.209 1.209 12 H -0.223 1.223 13 C -0.135 4.135 14 C -0.275 4.275 15 C 0.076 3.924 16 H 0.095 0.905 17 N -0.366 5.366 18 C -0.179 4.179 19 C -0.136 4.136 20 C -0.078 4.078 21 H 0.086 0.914 22 H 0.133 0.867 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.151 0.849 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.272 -11.810 0.626 13.883 hybrid contribution 2.334 -2.201 0.239 3.217 sum -4.938 -14.011 0.866 14.881 Atomic orbital electron populations 1.20248 0.85457 1.03765 1.02434 1.22293 0.97500 0.89859 1.01723 1.76083 0.87552 1.24555 1.35791 1.44774 1.03819 1.04384 1.43154 1.20966 0.85118 0.91209 1.55394 0.88011 1.27519 1.08668 0.92930 0.91390 1.70912 0.99864 1.37799 1.41239 0.81946 0.69337 0.71052 0.78345 1.24259 1.20920 1.22332 1.21442 0.98236 0.83934 1.09928 1.19530 0.89944 0.96207 1.21850 1.19512 0.89077 0.87674 0.96106 0.90516 1.58732 1.38926 1.26914 1.11981 1.22374 0.95504 1.00422 0.99633 1.21437 0.98556 0.93502 1.00122 1.20134 0.92587 0.93864 1.01186 0.91432 0.86667 0.93214 0.91367 0.83489 0.84855 0.92608 0.89031 0.89087 0.91845 0.91352 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.12 10.28 71.24 0.73 -1.39 16 2 C 0.04 1.80 7.17 42.98 0.31 2.10 16 3 N -0.41 -21.82 7.20 -47.41 -0.34 -22.16 16 4 N -0.20 -10.68 3.66 -178.74 -0.65 -11.34 16 5 C -0.40 -22.97 10.41 84.00 0.87 -22.10 16 6 H 0.10 5.85 7.87 -2.91 -0.02 5.83 16 7 C 0.00 0.21 5.50 84.95 0.47 0.67 16 8 N -0.87 -51.30 13.68 21.66 0.30 -51.01 16 9 Si 1.16 61.75 25.74 68.60 1.77 63.52 16 10 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 11 H -0.28 -15.11 6.76 99.48 0.67 -14.44 16 12 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 13 C 0.00 -0.07 6.72 41.41 0.28 0.21 16 14 C -0.26 -10.59 5.53 -20.09 -0.11 -10.70 16 15 C 0.19 5.32 3.51 44.33 0.16 5.48 16 16 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 17 N -0.84 -19.31 7.23 -171.09 -1.24 -20.54 16 18 C -0.14 -3.25 5.49 30.75 0.17 -3.08 16 19 C -0.10 -2.51 5.90 30.76 0.18 -2.33 16 20 C -0.04 -1.39 5.88 30.01 0.18 -1.21 16 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.11 3.46 6.16 -2.39 -0.01 3.45 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.28 15.67 8.72 -92.71 -0.81 14.86 16 25 H 0.35 5.78 9.05 -89.69 -0.81 4.97 16 26 H 0.34 8.21 8.98 -89.69 -0.81 7.40 16 27 H 0.06 1.37 8.11 -2.38 -0.02 1.35 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.65 8.11 -2.38 -0.02 1.63 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 Total: -1.00 -67.94 258.83 2.51 -65.43 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -0.55 Total: 8.45 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.23 Total: -32.34 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -1.94 Total: -105.05 kcal Atomic # 14 Polarization: 61.75 SS G_CDS: 1.77 Total: 63.52 kcal Total: -67.94 2.51 -65.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082826035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.408 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds