Wall clock time and date at job start Mon Mar 30 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47143 * 299.99869 * 3 2 1 6 6 H 1.48503 * 109.47637 * 60.00090 * 3 2 1 7 7 C 1.38987 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.37401 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.40313 * 126.18083 * 359.94884 * 9 7 2 11 11 C 1.31171 * 108.33013 * 179.97438 * 10 9 7 12 12 C 1.39568 * 108.28484 * 0.02562 * 11 10 9 13 13 C 1.35633 * 126.18007 * 180.02562 * 9 7 2 14 14 C 1.50794 * 128.09402 * 0.16104 * 13 9 7 15 15 C 1.53372 * 108.36736 * 163.37988 * 14 13 9 16 16 C 1.53107 * 109.50827 * 49.88962 * 15 14 13 17 17 C 1.50855 * 127.89191 * 180.02562 * 12 11 10 18 18 H 1.08998 * 109.71282 * 283.16934 * 17 12 11 19 19 C 1.52994 * 109.67850 * 43.70672 * 17 12 11 20 20 N 1.46904 * 109.47078 * 293.91810 * 19 17 12 21 21 H 0.96997 * 120.00227 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.85617 * 180.02562 * 11 10 9 23 23 H 1.09003 * 109.68052 * 283.08374 * 14 13 9 24 24 H 1.08997 * 109.68745 * 43.60642 * 14 13 9 25 25 H 1.09004 * 109.46765 * 289.87522 * 15 14 13 26 26 H 1.09004 * 109.45880 * 169.90263 * 15 14 13 27 27 H 1.09002 * 109.46525 * 169.73834 * 16 15 14 28 28 H 1.08994 * 109.45998 * 49.76128 * 16 15 14 29 29 H 1.08990 * 109.47542 * 53.92357 * 19 17 12 30 30 H 1.09007 * 109.47010 * 173.92792 * 19 17 12 31 31 H 1.00902 * 110.99769 * 180.02562 * 20 19 17 32 32 H 1.00898 * 111.00216 * 303.96216 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.7068 1.3465 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0001 9 7 1.3209 -2.3936 0.0005 10 7 -0.0741 -2.5447 0.0010 11 6 -0.3501 -3.8270 0.0003 12 6 0.8533 -4.5339 -0.0001 13 6 1.8687 -3.6343 0.0015 14 6 3.3301 -4.0061 0.0062 15 6 3.4532 -5.4773 0.4219 16 6 2.4953 -6.3275 -0.4170 17 6 1.0491 -6.0297 -0.0015 18 1 0.8648 -6.4256 0.9972 19 6 0.0836 -6.6748 -0.9977 20 7 -1.2971 -6.4891 -0.5319 21 1 -0.4850 0.8400 0.0004 22 1 -1.3389 -4.2612 0.0001 23 1 3.7465 -3.8708 -0.9921 24 1 3.8668 -3.3770 0.7162 25 1 3.1999 -5.5790 1.4772 26 1 4.4765 -5.8160 0.2598 27 1 2.7096 -7.3838 -0.2541 28 1 2.6271 -6.0888 -1.4722 29 1 0.2035 -6.2070 -1.9748 30 1 0.3004 -7.7402 -1.0759 31 1 -1.9544 -6.9071 -1.1732 32 1 -1.4171 -6.8575 0.3998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082827924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:15 Heat of formation + Delta-G solvation = 62.757093 kcal Electronic energy + Delta-G solvation = -15291.258818 eV Core-core repulsion = 12866.638150 eV Total energy + Delta-G solvation = -2424.620668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75073 -36.34074 -33.96675 -33.22148 -30.66820 -28.84836 -27.86442 -24.79095 -24.06345 -21.16731 -20.72883 -20.03046 -17.62699 -16.84702 -15.34856 -15.11961 -14.69408 -14.10249 -14.01279 -13.47798 -12.97248 -12.94316 -12.34729 -11.98298 -11.72546 -11.41609 -11.30872 -11.18074 -10.77436 -10.63926 -10.47053 -10.27550 -9.95933 -9.65969 -9.22358 -8.40410 -8.15801 -7.77555 -6.69337 -6.39806 -4.07689 3.03539 3.12794 3.17668 3.75069 3.94791 4.53967 4.86081 4.98141 5.17478 5.40707 5.50262 5.60901 5.71199 5.95202 6.05230 6.18271 6.20447 6.33857 6.36539 6.54935 6.58027 6.67393 6.77135 6.97324 7.17598 7.27524 7.49563 7.58754 7.78924 7.94751 8.11287 8.51584 8.92406 9.65895 9.95429 10.56964 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038747 B = 0.009121 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.453971 B = 3069.056340 C = 3702.194914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.047 3.953 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.327 4.327 8 H 0.111 0.889 9 N -0.150 5.150 10 N -0.277 5.277 11 C -0.017 4.017 12 C -0.266 4.266 13 C -0.032 4.032 14 C -0.031 4.031 15 C -0.105 4.105 16 C -0.108 4.108 17 C 0.008 3.992 18 H 0.052 0.948 19 C 0.078 3.922 20 N -0.839 5.839 21 H 0.270 0.730 22 H 0.165 0.835 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.011 0.989 31 H 0.331 0.669 32 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -9.513 -0.446 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.459 4.459 8 H 0.128 0.872 9 N 0.084 4.916 10 N -0.106 5.106 11 C -0.192 4.192 12 C -0.281 4.281 13 C -0.163 4.163 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.011 4.011 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.367 5.367 21 H 0.081 0.919 22 H 0.182 0.818 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.143 0.857 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.121 -7.321 -0.531 7.976 hybrid contribution 0.639 -1.024 0.006 1.207 sum 3.760 -8.345 -0.524 9.168 Atomic orbital electron populations 1.70236 1.05988 1.27273 1.36849 1.25568 0.95608 0.99971 0.95701 0.85877 0.79721 0.80876 0.78322 1.18833 1.20078 1.20065 1.19809 0.91489 0.81042 1.53528 0.87173 1.44553 1.04006 1.03023 1.40042 1.78354 0.89617 1.15786 1.26866 1.23575 0.98288 0.91350 1.05953 1.18867 0.92302 0.92679 1.24205 1.20352 0.94413 0.86127 1.15456 1.19837 0.91670 0.95155 1.00356 1.21442 0.97964 0.94935 0.99954 1.21544 0.95213 0.97792 1.00033 1.19318 0.92342 0.93015 0.96475 0.93027 1.21785 0.88379 0.95717 0.99425 1.58605 1.04955 1.66742 1.06439 0.91946 0.81844 0.92380 0.92177 0.92187 0.92634 0.93214 0.92197 0.91392 0.97108 0.85708 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.56 11.82 55.49 0.66 -21.90 16 2 C 0.05 1.28 5.50 -17.51 -0.10 1.19 16 3 Si 0.93 19.93 29.55 -169.99 -5.02 14.90 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.33 -9.14 10.07 -14.78 -0.15 -9.28 16 8 H 0.11 2.82 7.66 -52.49 -0.40 2.42 16 9 N -0.15 -4.30 3.72 -7.85 -0.03 -4.33 16 10 N -0.28 -8.26 10.44 30.62 0.32 -7.94 16 11 C -0.02 -0.43 11.10 -17.34 -0.19 -0.62 16 12 C -0.27 -6.20 5.44 -104.97 -0.57 -6.77 16 13 C -0.03 -0.78 6.72 -81.79 -0.55 -1.33 16 14 C -0.03 -0.62 5.87 -27.64 -0.16 -0.78 16 15 C -0.10 -1.69 5.90 -26.48 -0.16 -1.85 16 16 C -0.11 -1.69 5.21 -26.48 -0.14 -1.83 16 17 C 0.01 0.15 2.70 -91.50 -0.25 -0.10 16 18 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 19 C 0.08 1.21 6.08 -3.82 -0.02 1.19 16 20 N -0.84 -12.24 7.37 -10.37 -0.08 -12.32 16 21 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.16 3.90 6.59 -52.49 -0.35 3.55 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.33 4.01 9.08 -39.29 -0.36 3.65 16 32 H 0.34 4.41 8.99 -39.29 -0.35 4.06 16 LS Contribution 262.63 15.07 3.96 3.96 Total: -1.00 -32.29 262.63 -6.87 -39.17 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.39 Total: 8.65 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.28 Total: -20.19 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.87 Total: -46.49 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.29 -6.87 -39.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082827924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.923 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds