Wall clock time and date at job start Mon Mar 30 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47143 * 299.99869 * 3 2 1 6 6 H 1.48503 * 109.47637 * 60.00090 * 3 2 1 7 7 C 1.38987 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.37401 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.40313 * 126.18083 * 359.94884 * 9 7 2 11 11 C 1.31171 * 108.33013 * 179.97438 * 10 9 7 12 12 C 1.39568 * 108.28484 * 0.02562 * 11 10 9 13 13 C 1.35633 * 126.18007 * 180.02562 * 9 7 2 14 14 C 1.50794 * 128.09402 * 0.16104 * 13 9 7 15 15 C 1.53372 * 108.36736 * 163.37988 * 14 13 9 16 16 C 1.53107 * 109.50827 * 49.88962 * 15 14 13 17 17 C 1.50855 * 127.89191 * 180.02562 * 12 11 10 18 18 H 1.08998 * 109.71282 * 283.16934 * 17 12 11 19 19 C 1.52994 * 109.67850 * 43.70672 * 17 12 11 20 20 N 1.46904 * 109.47078 * 293.91810 * 19 17 12 21 21 H 0.96997 * 120.00227 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.85617 * 180.02562 * 11 10 9 23 23 H 1.09003 * 109.68052 * 283.08374 * 14 13 9 24 24 H 1.08997 * 109.68745 * 43.60642 * 14 13 9 25 25 H 1.09004 * 109.46765 * 289.87522 * 15 14 13 26 26 H 1.09004 * 109.45880 * 169.90263 * 15 14 13 27 27 H 1.09002 * 109.46525 * 169.73834 * 16 15 14 28 28 H 1.08994 * 109.45998 * 49.76128 * 16 15 14 29 29 H 1.08990 * 109.47542 * 53.92357 * 19 17 12 30 30 H 1.09007 * 109.47010 * 173.92792 * 19 17 12 31 31 H 1.00902 * 110.99769 * 180.02562 * 20 19 17 32 32 H 1.00898 * 111.00216 * 303.96216 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.7068 1.3465 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0001 9 7 1.3209 -2.3936 0.0005 10 7 -0.0741 -2.5447 0.0010 11 6 -0.3501 -3.8270 0.0003 12 6 0.8533 -4.5339 -0.0001 13 6 1.8687 -3.6343 0.0015 14 6 3.3301 -4.0061 0.0062 15 6 3.4532 -5.4773 0.4219 16 6 2.4953 -6.3275 -0.4170 17 6 1.0491 -6.0297 -0.0015 18 1 0.8648 -6.4256 0.9972 19 6 0.0836 -6.6748 -0.9977 20 7 -1.2971 -6.4891 -0.5319 21 1 -0.4850 0.8400 0.0004 22 1 -1.3389 -4.2612 0.0001 23 1 3.7465 -3.8708 -0.9921 24 1 3.8668 -3.3770 0.7162 25 1 3.1999 -5.5790 1.4772 26 1 4.4765 -5.8160 0.2598 27 1 2.7096 -7.3838 -0.2541 28 1 2.6271 -6.0888 -1.4722 29 1 0.2035 -6.2070 -1.9748 30 1 0.3004 -7.7402 -1.0759 31 1 -1.9544 -6.9071 -1.1732 32 1 -1.4171 -6.8575 0.3998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082827924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:15 Heat of formation + Delta-G solvation = 40.083319 kcal Electronic energy + Delta-G solvation = -15292.242027 eV Core-core repulsion = 12866.638150 eV Total energy + Delta-G solvation = -2425.603877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62285 -37.84820 -35.37712 -35.13420 -32.47551 -30.43225 -29.60968 -26.78608 -25.49210 -22.65707 -22.25146 -21.96274 -19.30254 -18.75723 -17.23181 -16.52903 -16.19445 -15.72192 -15.32422 -14.99229 -14.79959 -14.52307 -13.87369 -13.59826 -13.34558 -13.07580 -12.93936 -12.83624 -12.56589 -12.21644 -12.07895 -11.61936 -11.39719 -11.17297 -11.10440 -10.36847 -9.84369 -9.31607 -8.61433 -8.39970 -6.17646 1.31606 1.36090 1.54066 1.86431 2.15243 2.61132 2.99566 3.14526 3.80880 4.08191 4.16476 4.25467 4.41323 4.55758 4.61702 4.79310 4.85382 4.96296 5.00318 5.02709 5.10400 5.16987 5.20172 5.39101 5.55185 5.62972 5.66731 6.03457 6.12293 6.47559 6.55583 6.81967 6.95214 7.67855 7.93187 8.60261 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038747 B = 0.009121 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.453971 B = 3069.056340 C = 3702.194914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C -0.007 4.007 3 Si 1.011 2.989 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.361 4.361 8 H 0.124 0.876 9 N -0.184 5.184 10 N -0.335 5.335 11 C -0.031 4.031 12 C -0.259 4.259 13 C -0.045 4.045 14 C -0.033 4.033 15 C -0.099 4.099 16 C -0.105 4.105 17 C 0.006 3.994 18 H 0.061 0.939 19 C 0.084 3.916 20 N -0.856 5.856 21 H 0.272 0.728 22 H 0.176 0.824 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.346 0.654 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -11.271 -0.452 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.217 4.217 3 Si 0.831 3.169 4 H -0.169 1.169 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.141 0.859 9 N 0.048 4.952 10 N -0.164 5.164 11 C -0.206 4.206 12 C -0.272 4.272 13 C -0.176 4.176 14 C -0.072 4.072 15 C -0.137 4.137 16 C -0.143 4.143 17 C -0.014 4.014 18 H 0.079 0.921 19 C -0.046 4.046 20 N -0.388 5.388 21 H 0.081 0.919 22 H 0.193 0.807 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.023 -9.113 -0.538 10.419 hybrid contribution 0.006 -0.639 0.011 0.640 sum 5.029 -9.752 -0.526 10.985 Atomic orbital electron populations 1.70414 1.08148 1.28352 1.38931 1.26754 0.96488 1.03956 0.94516 0.84656 0.78920 0.75055 0.78296 1.16888 1.19658 1.19605 1.20360 0.92354 0.81793 1.54625 0.85873 1.44824 1.03788 1.04409 1.42137 1.78213 0.91370 1.18058 1.28794 1.23951 0.99878 0.90941 1.05827 1.19535 0.90675 0.95750 1.21256 1.21447 0.97366 0.85318 1.13474 1.20045 0.88307 0.98005 1.00882 1.21462 1.00411 0.92070 0.99741 1.21560 0.93166 1.00046 0.99485 1.19499 0.94894 0.89126 0.97866 0.92120 1.21636 0.88273 0.97260 0.97479 1.58510 1.05088 1.67674 1.07479 0.91873 0.80716 0.91706 0.92352 0.92426 0.88885 0.89217 0.92690 0.93495 0.93532 0.84113 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.38 11.82 21.66 0.26 -50.12 16 2 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 3 Si 1.01 41.59 29.55 68.60 2.03 43.62 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.36 -20.74 10.07 84.00 0.85 -19.89 16 8 H 0.12 6.41 7.66 -2.91 -0.02 6.39 16 9 N -0.18 -10.88 3.72 -178.75 -0.67 -11.55 16 10 N -0.34 -20.80 10.44 -57.05 -0.60 -21.39 16 11 C -0.03 -1.63 11.10 85.11 0.94 -0.68 16 12 C -0.26 -11.94 5.44 -20.09 -0.11 -12.05 16 13 C -0.04 -2.23 6.72 41.40 0.28 -1.95 16 14 C -0.03 -1.28 5.87 30.00 0.18 -1.10 16 15 C -0.10 -2.83 5.90 30.75 0.18 -2.65 16 16 C -0.10 -2.86 5.21 30.76 0.16 -2.70 16 17 C 0.01 0.20 2.70 -11.36 -0.03 0.17 16 18 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.08 2.40 6.08 86.30 0.53 2.93 16 20 N -0.86 -23.48 7.37 -186.72 -1.38 -24.86 16 21 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 22 H 0.18 8.52 6.59 -2.91 -0.02 8.50 16 23 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 1.69 8.11 -2.38 -0.02 1.67 16 26 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.35 7.72 9.08 -89.69 -0.81 6.91 16 32 H 0.34 8.35 8.99 -89.70 -0.81 7.54 16 Total: -1.00 -73.85 262.63 2.60 -71.25 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.49 Total: 30.90 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.44 Total: -37.85 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -2.38 Total: -107.92 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -73.85 2.60 -71.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082827924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.336 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds