Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21342 * 120.00182 * 2 1 4 4 C 1.46454 * 120.00067 * 180.02562 * 2 1 3 5 5 C 1.46902 * 127.06225 * 359.96742 * 4 2 1 6 6 C 1.34350 * 106.35891 * 180.02562 * 5 4 2 7 7 N 1.36496 * 109.15985 * 359.97438 * 6 5 4 8 8 C 1.46500 * 124.77326 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47473 * 90.02502 * 8 7 6 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.46942 * 239.99938 * 15 13 11 19 19 C 1.34486 * 110.45035 * 0.26515 * 7 6 5 20 20 H 1.09002 * 109.46682 * 269.99619 * 1 2 3 21 21 H 1.08997 * 109.47188 * 29.99440 * 1 2 3 22 22 H 1.09000 * 109.47316 * 150.00056 * 1 2 3 23 23 H 1.08006 * 126.82156 * 0.02562 * 5 4 2 24 24 H 1.07996 * 125.42248 * 180.02562 * 6 5 4 25 25 H 1.09002 * 109.47129 * 330.02244 * 8 7 6 26 26 H 1.08998 * 109.46845 * 210.03051 * 8 7 6 27 27 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 29 29 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 30 30 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 31 31 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 32 32 H 1.07992 * 125.92416 * 179.73417 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2393 -1.2683 -0.0006 5 6 1.6668 -2.6212 -0.0005 6 6 2.7065 -3.4721 -0.0006 7 7 3.8697 -2.7580 -0.0013 8 6 5.2114 -3.3464 -0.0021 9 6 5.6779 -3.5507 -1.4448 10 6 7.0788 -4.1658 -1.4455 11 6 7.5385 -4.3664 -2.8667 12 1 6.8956 -4.0839 -3.6871 13 6 8.7799 -4.9107 -3.1193 14 7 9.5629 -5.2544 -2.1202 15 14 9.3494 -5.1601 -4.8808 16 1 8.2915 -4.6952 -5.8136 17 1 10.5919 -4.3808 -5.1143 18 1 9.6180 -6.6017 -5.1148 19 6 3.6110 -1.4383 0.0042 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 0.6183 -2.8804 -0.0004 24 1 2.6335 -4.5496 -0.0010 25 1 5.1869 -4.3076 0.5114 26 1 5.9017 -2.6776 0.5118 27 1 5.7024 -2.5895 -1.9583 28 1 4.9875 -4.2196 -1.9586 29 1 7.7695 -3.4973 -0.9316 30 1 7.0538 -5.1270 -0.9322 31 1 10.4364 -5.6369 -2.2979 32 1 4.3472 -0.6482 0.0090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085832993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = -12.885488 kcal Electronic energy + Delta-G solvation = -14014.504192 eV Core-core repulsion = 11554.310665 eV Total energy + Delta-G solvation = -2460.193528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03680 -38.56792 -34.86497 -32.77773 -31.02695 -29.63345 -28.88973 -26.55995 -23.65544 -22.21043 -20.63275 -19.78348 -18.86469 -17.22520 -16.23644 -15.07826 -14.89280 -14.71912 -14.59077 -14.21106 -14.08914 -13.54644 -12.88414 -12.43902 -12.21444 -12.12041 -11.89036 -11.80841 -11.59081 -10.95602 -10.95190 -10.63997 -9.97749 -9.69089 -9.56450 -9.27240 -8.47187 -8.43902 -8.17737 -6.11699 -4.14861 1.55021 2.54686 3.07770 3.24948 3.32935 3.37323 3.41775 4.37573 4.44348 5.00358 5.09482 5.12918 5.22272 5.25113 5.41968 5.47176 5.49910 5.66966 5.73210 5.86280 6.02025 6.26927 6.31886 6.48785 6.81422 6.87911 7.24489 7.39485 7.48632 7.58755 7.84987 7.85962 8.27194 8.91454 9.50438 10.99557 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050011 B = 0.004612 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.743624 B = 6070.118151 C = 6227.728472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.426 3.574 3 O -0.491 6.491 4 C -0.286 4.286 5 C -0.165 4.165 6 C -0.017 4.017 7 N -0.427 5.427 8 C 0.091 3.909 9 C -0.124 4.124 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.085 3.915 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.143 0.857 24 H 0.164 0.836 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.261 0.739 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 3.973 5.567 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.307 3.693 3 O -0.370 6.370 4 C -0.294 4.294 5 C -0.188 4.188 6 C -0.144 4.144 7 N -0.099 5.099 8 C -0.029 4.029 9 C -0.162 4.162 10 C -0.014 4.014 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.054 4.054 20 H 0.108 0.892 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.161 0.839 24 H 0.181 0.819 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.124 4.235 5.608 15.776 hybrid contribution 0.420 -0.412 -0.959 1.125 sum -13.704 3.823 4.649 14.967 Atomic orbital electron populations 1.22108 0.94561 1.04179 1.04016 1.21446 0.90954 0.86670 0.70191 1.90527 1.72332 1.34468 1.39629 1.21167 0.92890 0.94327 1.20972 1.21954 0.97989 0.90881 1.07961 1.21782 0.84339 0.97959 1.10353 1.44176 1.07676 1.05723 1.52298 1.22430 0.79410 0.99608 1.01439 1.22063 1.00842 1.01551 0.91755 1.19062 0.88754 0.95846 0.97740 1.21211 1.01278 1.41442 0.92222 0.92544 1.25017 0.96686 0.95383 0.97262 1.69958 1.09915 1.42772 1.30716 0.86508 0.78729 0.77861 0.84776 1.19684 1.20892 1.20903 1.22393 0.96541 0.85702 1.00748 0.89169 0.90221 0.89890 0.83884 0.81879 0.89105 0.89216 0.92481 0.92436 0.96252 0.96264 0.92895 0.81136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 10.05 36.00 0.36 -1.43 16 2 C 0.43 5.89 7.23 -31.00 -0.22 5.66 16 3 O -0.49 -8.44 17.67 5.50 0.10 -8.34 16 4 C -0.29 -4.06 6.29 -103.09 -0.65 -4.70 16 5 C -0.16 -2.02 10.44 -37.45 -0.39 -2.41 16 6 C -0.02 -0.22 11.31 -16.85 -0.19 -0.42 16 7 N -0.43 -6.18 2.68 -116.77 -0.31 -6.49 16 8 C 0.09 1.38 6.00 -4.04 -0.02 1.35 16 9 C -0.12 -2.36 5.48 -26.73 -0.15 -2.51 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 C 0.08 1.26 11.18 -16.40 -0.18 1.08 16 20 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.08 0.65 7.40 -51.93 -0.38 0.26 16 23 H 0.14 1.33 7.74 -52.48 -0.41 0.93 16 24 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 25 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 26 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.17 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -31.30 284.43 -6.77 -38.07 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.56 Total: -2.28 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.00 Total: -16.10 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.42 Total: -31.87 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.10 Total: -8.34 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.30 -6.77 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085832993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.186 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds