Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99887 * 2 1 4 4 C 1.53001 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47078 * 55.00147 * 4 3 2 6 6 N 1.46899 * 109.47118 * 295.00056 * 4 3 2 7 7 C 1.50706 * 109.47098 * 175.00323 * 4 3 2 8 8 C 1.37636 * 120.13018 * 100.00062 * 7 4 3 9 9 C 1.38609 * 120.24980 * 179.97438 * 8 7 4 10 10 C 1.38654 * 120.50047 * 0.02562 * 9 8 7 11 11 C 1.37599 * 120.25160 * 0.02562 * 10 9 8 12 12 C 1.40692 * 120.12508 * 279.72332 * 7 4 3 13 13 C 1.41398 * 120.24658 * 359.97438 * 12 7 4 14 14 H 1.08007 * 119.99905 * 333.95102 * 13 12 7 15 15 C 1.39943 * 120.00430 * 153.95255 * 13 12 7 16 16 N 1.30827 * 119.99994 * 343.27571 * 15 13 12 17 17 Si 1.86795 * 120.00115 * 163.27137 * 15 13 12 18 18 H 1.48499 * 109.47393 * 60.00115 * 17 15 13 19 19 H 1.48505 * 109.47243 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47498 * 300.00051 * 17 15 13 21 21 H 1.08999 * 109.46473 * 60.00146 * 1 2 3 22 22 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46867 * 300.00498 * 1 2 3 24 24 H 1.08995 * 109.47411 * 300.00098 * 3 2 1 25 25 H 1.08998 * 109.47403 * 60.00076 * 3 2 1 26 26 H 1.00909 * 111.00205 * 299.99866 * 6 4 3 27 27 H 1.00895 * 111.00039 * 63.95043 * 6 4 3 28 28 H 1.08006 * 119.87408 * 359.97438 * 8 7 4 29 29 H 1.08001 * 119.75241 * 179.97438 * 9 8 7 30 30 H 1.08006 * 119.87680 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.13016 * 179.97438 * 11 10 9 32 32 H 0.96991 * 119.99920 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8409 6 7 3.9769 0.5627 1.2561 7 6 4.1481 2.5560 -0.1231 8 6 4.6254 3.2028 0.9941 9 6 5.1898 4.4639 0.8830 10 6 5.2799 5.0884 -0.3516 11 6 4.8084 4.4610 -1.4818 12 6 4.2396 3.1775 -1.3820 13 6 3.7584 2.5199 -2.5376 14 1 3.7142 1.4412 -2.5661 15 6 3.3396 3.2668 -3.6445 16 7 3.0799 4.5423 -3.5126 17 14 3.1513 2.4428 -5.3102 18 1 2.1478 1.3526 -5.2126 19 1 2.6996 3.4440 -6.3096 20 1 4.4576 1.8767 -5.7330 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6887 1.8464 -0.8899 25 1 1.6887 1.8464 0.8900 26 1 3.6958 1.1157 2.0521 27 1 3.6317 -0.3823 1.3325 28 1 4.5599 2.7260 1.9610 29 1 5.5614 4.9644 1.7650 30 1 5.7213 6.0713 -0.4265 31 1 4.8792 4.9493 -2.4425 32 1 2.7893 5.0598 -4.2796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104489962.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -34.156690 kcal Electronic energy + Delta-G solvation = -15095.687263 eV Core-core repulsion = 12634.571346 eV Total energy + Delta-G solvation = -2461.115916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.37042 -37.08816 -34.18799 -33.57315 -29.94820 -28.82640 -27.57922 -25.61453 -25.05358 -22.13023 -20.82531 -19.11861 -17.30065 -16.33615 -15.54216 -15.26496 -14.86897 -14.82288 -14.28585 -13.60912 -13.35523 -12.60527 -12.42774 -12.22148 -11.64296 -11.55802 -11.29905 -11.11507 -10.97172 -10.79282 -10.53651 -10.43888 -9.49827 -9.30519 -9.27824 -9.13126 -8.09133 -7.35359 -7.32056 -6.75736 -4.36478 2.78783 2.98883 3.06071 3.09878 3.25523 3.93048 4.24073 4.64832 5.31141 5.48426 5.58387 5.64958 5.81266 5.83255 6.04030 6.19426 6.25468 6.41749 6.50973 6.56146 6.86182 7.11298 7.27882 7.38570 7.53536 7.62128 7.73240 7.92240 8.04230 8.10022 8.17985 8.31141 8.63160 8.88721 8.96918 10.18484 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.013502 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.394718 B = 2073.338250 C = 3275.419244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.398 6.398 3 C 0.033 3.967 4 C 0.166 3.834 5 H 0.086 0.914 6 N -0.840 5.840 7 C -0.191 4.191 8 C -0.074 4.074 9 C -0.243 4.243 10 C -0.106 4.106 11 C -0.163 4.163 12 C 0.120 3.880 13 C -0.463 4.463 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.796 5.796 17 Si 0.903 3.097 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.263 1.263 21 H 0.039 0.961 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.330 0.670 27 H 0.335 0.665 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -3.941 3.057 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.318 6.318 3 C -0.045 4.045 4 C 0.054 3.946 5 H 0.104 0.896 6 N -0.368 5.368 7 C -0.193 4.193 8 C -0.093 4.093 9 C -0.262 4.262 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.117 3.883 13 C -0.493 4.493 14 H 0.098 0.902 15 C -0.140 4.140 16 N -0.421 5.421 17 Si 0.728 3.272 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.188 1.188 21 H 0.058 0.942 22 H 0.096 0.904 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.812 -3.798 2.633 5.410 hybrid contribution -1.469 0.048 -0.583 1.581 sum -4.281 -3.750 2.050 6.049 Atomic orbital electron populations 1.22638 0.82105 1.01752 0.99736 1.87783 1.18932 1.29562 1.95474 1.23564 0.96705 0.83332 1.00911 1.19839 0.88132 0.94512 0.92070 0.89597 1.59049 1.67279 1.06182 1.04257 1.19328 1.10313 0.96111 0.93551 1.20293 0.98269 0.94119 0.96593 1.20373 1.12025 0.97519 0.96321 1.20702 1.00230 0.97923 0.93644 1.21288 1.02214 0.97293 0.97406 1.17388 0.88371 0.91577 0.90949 1.19539 1.37747 0.94613 0.97394 0.90236 1.25867 0.92841 0.94618 1.00647 1.69814 1.32187 1.07882 1.32243 0.86441 0.79849 0.79841 0.81082 1.19012 1.20421 1.18754 0.94199 0.90360 0.94786 0.91315 0.94530 0.85698 0.85313 0.88942 0.89644 0.89588 0.86480 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.40 -7.13 10.37 -35.23 -0.37 -7.50 16 3 C 0.03 0.65 5.46 37.16 0.20 0.85 16 4 C 0.17 3.46 2.75 -68.86 -0.19 3.27 16 5 H 0.09 1.94 6.72 -51.93 -0.35 1.59 16 6 N -0.84 -15.09 8.70 -5.65 -0.05 -15.14 16 7 C -0.19 -4.53 5.14 -103.91 -0.53 -5.06 16 8 C -0.07 -1.67 9.24 -39.66 -0.37 -2.04 16 9 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 10 C -0.11 -2.53 10.02 -39.66 -0.40 -2.93 16 11 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 12 C 0.12 3.12 5.56 -106.82 -0.59 2.52 16 13 C -0.46 -11.91 7.74 -37.74 -0.29 -12.20 16 14 H 0.08 2.00 6.47 -52.48 -0.34 1.66 16 15 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 16 N -0.80 -20.22 10.98 55.55 0.61 -19.61 16 17 Si 0.90 18.62 29.59 -169.99 -5.03 13.59 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 1.51 7.45 -51.93 -0.39 1.12 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.33 5.53 7.30 -39.29 -0.29 5.24 16 27 H 0.33 5.45 8.75 -39.29 -0.34 5.11 16 28 H 0.09 1.85 6.24 -52.48 -0.33 1.53 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.12 3.12 6.22 -52.49 -0.33 2.80 16 32 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 267.90 15.07 4.04 4.04 Total: -1.00 -26.94 267.90 -6.71 -33.65 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.03 Total: 13.60 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.88 Total: -22.63 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.56 Total: -34.75 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.37 Total: -7.50 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.94 -6.71 -33.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104489962.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.506 kcal (2) G-P(sol) polarization free energy of solvation -26.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds