Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99887 * 2 1 4 4 C 1.53001 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47078 * 55.00147 * 4 3 2 6 6 N 1.46899 * 109.47118 * 295.00056 * 4 3 2 7 7 C 1.50706 * 109.47098 * 175.00323 * 4 3 2 8 8 C 1.37636 * 120.13018 * 100.00062 * 7 4 3 9 9 C 1.38609 * 120.24980 * 179.97438 * 8 7 4 10 10 C 1.38654 * 120.50047 * 0.02562 * 9 8 7 11 11 C 1.37599 * 120.25160 * 0.02562 * 10 9 8 12 12 C 1.40692 * 120.12508 * 279.72332 * 7 4 3 13 13 C 1.41398 * 120.24658 * 359.97438 * 12 7 4 14 14 H 1.08007 * 119.99905 * 333.95102 * 13 12 7 15 15 C 1.39943 * 120.00430 * 153.95255 * 13 12 7 16 16 N 1.30827 * 119.99994 * 343.27571 * 15 13 12 17 17 Si 1.86795 * 120.00115 * 163.27137 * 15 13 12 18 18 H 1.48499 * 109.47393 * 60.00115 * 17 15 13 19 19 H 1.48505 * 109.47243 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47498 * 300.00051 * 17 15 13 21 21 H 1.08999 * 109.46473 * 60.00146 * 1 2 3 22 22 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46867 * 300.00498 * 1 2 3 24 24 H 1.08995 * 109.47411 * 300.00098 * 3 2 1 25 25 H 1.08998 * 109.47403 * 60.00076 * 3 2 1 26 26 H 1.00909 * 111.00205 * 299.99866 * 6 4 3 27 27 H 1.00895 * 111.00039 * 63.95043 * 6 4 3 28 28 H 1.08006 * 119.87408 * 359.97438 * 8 7 4 29 29 H 1.08001 * 119.75241 * 179.97438 * 9 8 7 30 30 H 1.08006 * 119.87680 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.13016 * 179.97438 * 11 10 9 32 32 H 0.96991 * 119.99920 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8409 6 7 3.9769 0.5627 1.2561 7 6 4.1481 2.5560 -0.1231 8 6 4.6254 3.2028 0.9941 9 6 5.1898 4.4639 0.8830 10 6 5.2799 5.0884 -0.3516 11 6 4.8084 4.4610 -1.4818 12 6 4.2396 3.1775 -1.3820 13 6 3.7584 2.5199 -2.5376 14 1 3.7142 1.4412 -2.5661 15 6 3.3396 3.2668 -3.6445 16 7 3.0799 4.5423 -3.5126 17 14 3.1513 2.4428 -5.3102 18 1 2.1478 1.3526 -5.2126 19 1 2.6996 3.4440 -6.3096 20 1 4.4576 1.8767 -5.7330 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6887 1.8464 -0.8899 25 1 1.6887 1.8464 0.8900 26 1 3.6958 1.1157 2.0521 27 1 3.6317 -0.3823 1.3325 28 1 4.5599 2.7260 1.9610 29 1 5.5614 4.9644 1.7650 30 1 5.7213 6.0713 -0.4265 31 1 4.8792 4.9493 -2.4425 32 1 2.7893 5.0598 -4.2796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104489962.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -51.567005 kcal Electronic energy + Delta-G solvation = -15096.442230 eV Core-core repulsion = 12634.571346 eV Total energy + Delta-G solvation = -2461.870884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06616 -38.63283 -35.83374 -35.38364 -31.77192 -30.61190 -29.00076 -27.25656 -26.65012 -23.81220 -22.68234 -20.88101 -19.15403 -17.94318 -17.09137 -16.83143 -16.43404 -16.25343 -15.92871 -15.30389 -15.11972 -14.33598 -14.06412 -13.70301 -13.36199 -13.18787 -12.93319 -12.83963 -12.54782 -12.43478 -12.21818 -12.09073 -11.31523 -11.10667 -11.01652 -10.66979 -9.60024 -9.23553 -9.15990 -8.60385 -6.29649 0.99017 1.14525 1.37246 1.46834 1.54345 2.20548 2.75907 2.87736 3.72744 3.84410 4.17974 4.31024 4.42985 4.48910 4.52880 4.60508 4.72240 4.76339 4.80420 4.85621 5.09353 5.27510 5.39408 5.54213 5.76897 5.98220 6.12379 6.19150 6.22006 6.36427 6.47256 6.70117 6.78417 6.98809 7.08393 8.35854 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.013502 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.394718 B = 2073.338250 C = 3275.419244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.049 3.951 4 C 0.172 3.828 5 H 0.064 0.936 6 N -0.834 5.834 7 C -0.198 4.198 8 C -0.079 4.079 9 C -0.242 4.242 10 C -0.114 4.114 11 C -0.192 4.192 12 C 0.090 3.910 13 C -0.488 4.488 14 H 0.074 0.926 15 C 0.039 3.961 16 N -0.826 5.826 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.262 1.262 21 H 0.035 0.965 22 H 0.107 0.893 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.341 0.659 27 H 0.347 0.653 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -4.739 4.053 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.030 4.030 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.364 5.364 7 C -0.200 4.200 8 C -0.097 4.097 9 C -0.262 4.262 10 C -0.132 4.132 11 C -0.212 4.212 12 C 0.087 3.913 13 C -0.518 4.518 14 H 0.092 0.908 15 C -0.175 4.175 16 N -0.452 5.452 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.193 1.193 20 H -0.187 1.187 21 H 0.053 0.947 22 H 0.125 0.875 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.229 -4.602 3.650 6.703 hybrid contribution -1.351 0.291 -0.768 1.581 sum -4.580 -4.311 2.882 6.919 Atomic orbital electron populations 1.22912 0.79929 1.03876 1.00265 1.87755 1.21242 1.28216 1.95509 1.23211 0.95963 0.84027 0.99763 1.19578 0.88837 0.92849 0.92671 0.91843 1.58940 1.67215 1.06887 1.03353 1.19677 1.09856 0.97286 0.93212 1.20659 0.97416 0.94223 0.97442 1.20780 1.10921 0.97588 0.96863 1.20979 0.99836 0.98836 0.93544 1.21288 1.04242 0.98052 0.97591 1.17735 0.89144 0.92147 0.92250 1.19668 1.39070 0.94465 0.98559 0.90793 1.26610 0.92128 0.95093 1.03714 1.69871 1.32855 1.09088 1.33394 0.85444 0.79706 0.78987 0.76805 1.18576 1.19278 1.18689 0.94675 0.87483 0.93252 0.94467 0.93600 0.84551 0.83941 0.86074 0.86549 0.87536 0.88310 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.41 -14.04 10.37 -148.98 -1.54 -15.58 16 3 C 0.05 1.90 5.46 71.98 0.39 2.29 16 4 C 0.17 7.12 2.75 44.17 0.12 7.25 16 5 H 0.06 2.91 6.72 -2.39 -0.02 2.89 16 6 N -0.83 -28.33 8.70 -171.80 -1.50 -29.83 16 7 C -0.20 -9.38 5.14 -19.41 -0.10 -9.48 16 8 C -0.08 -3.43 9.24 22.22 0.21 -3.22 16 9 C -0.24 -10.51 10.05 22.46 0.23 -10.29 16 10 C -0.11 -5.34 10.02 22.22 0.22 -5.12 16 11 C -0.19 -10.22 8.69 22.73 0.20 -10.02 16 12 C 0.09 4.79 5.56 -21.29 -0.12 4.67 16 13 C -0.49 -25.91 7.74 23.46 0.18 -25.73 16 14 H 0.07 3.87 6.47 -2.91 -0.02 3.85 16 15 C 0.04 1.97 5.15 85.26 0.44 2.41 16 16 N -0.83 -43.13 10.98 21.83 0.24 -42.89 16 17 Si 0.97 38.71 29.59 68.60 2.03 40.74 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.04 1.67 7.45 -2.39 -0.02 1.65 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.34 10.43 7.30 -89.69 -0.65 9.77 16 27 H 0.35 10.54 8.75 -89.70 -0.78 9.75 16 28 H 0.12 4.47 6.24 -2.91 -0.02 4.45 16 29 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.10 5.50 6.22 -2.91 -0.02 5.48 16 32 H 0.29 13.62 8.30 -92.71 -0.77 12.86 16 Total: -1.00 -58.11 267.90 1.95 -56.17 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.30 Total: 36.69 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 3.02 Total: -45.30 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.26 Total: -72.72 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.54 Total: -15.58 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -58.11 1.95 -56.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104489962.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.602 kcal (2) G-P(sol) polarization free energy of solvation -58.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds