Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00440 * 2 1 4 4 C 1.52999 * 109.47386 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47046 * 54.99889 * 4 3 2 6 6 N 1.46904 * 109.46695 * 294.99940 * 4 3 2 7 7 C 1.50697 * 109.47168 * 175.00223 * 4 3 2 8 8 C 1.38657 * 119.87823 * 79.99689 * 7 4 3 9 9 C 1.38617 * 120.50015 * 179.97438 * 8 7 4 10 10 C 1.37631 * 120.24822 * 359.97438 * 9 8 7 11 11 C 1.40701 * 119.75055 * 0.02605 * 10 9 8 12 12 C 1.41394 * 120.24859 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99625 * 24.28082 * 12 11 10 14 14 C 1.39941 * 119.99750 * 204.27276 * 12 11 10 15 15 N 1.30822 * 120.00590 * 17.72566 * 14 12 11 16 16 Si 1.86808 * 119.99856 * 197.72325 * 14 12 11 17 17 H 1.48499 * 109.46856 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46988 * 120.00226 * 16 14 12 19 19 H 1.48504 * 109.47049 * 240.00548 * 16 14 12 20 20 C 1.37605 * 119.87293 * 259.72004 * 7 4 3 21 21 H 1.09001 * 109.46728 * 300.00157 * 1 2 3 22 22 H 1.09001 * 109.46834 * 59.99430 * 1 2 3 23 23 H 1.08997 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46961 * 300.00401 * 3 2 1 25 25 H 1.08998 * 109.47509 * 59.99999 * 3 2 1 26 26 H 1.00895 * 110.99958 * 300.00040 * 6 4 3 27 27 H 1.00900 * 110.99874 * 63.95555 * 6 4 3 28 28 H 1.07994 * 119.74930 * 359.95880 * 8 7 4 29 29 H 1.07997 * 119.87290 * 180.02562 * 9 8 7 30 30 H 1.08008 * 120.13073 * 180.02562 * 10 9 8 31 31 H 0.96998 * 120.00389 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.12621 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8508 0.5684 -0.8426 6 7 3.9778 0.5621 1.2544 7 6 4.1480 2.5558 -0.1244 8 6 4.2466 3.3716 0.9924 9 6 4.8082 4.6351 0.8933 10 6 5.2752 5.0932 -0.3175 11 6 5.1804 4.2741 -1.4576 12 6 5.6563 4.7344 -2.7070 13 1 6.4184 5.4987 -2.7461 14 6 5.1400 4.1995 -3.8925 15 7 4.0050 3.5491 -3.8770 16 14 6.0714 4.4142 -5.4975 17 1 7.3180 5.1815 -5.2475 18 1 6.4146 3.0805 -6.0529 19 1 5.2224 5.1511 -6.4678 20 6 4.6126 2.9914 -1.3442 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6886 1.8463 -0.8900 25 1 1.6888 1.8463 0.8899 26 1 3.6974 1.1148 2.0505 27 1 3.6327 -0.3830 1.3306 28 1 3.8829 3.0202 1.9466 29 1 4.8803 5.2619 1.7698 30 1 5.7128 6.0778 -0.3925 31 1 3.6470 3.1786 -4.6989 32 1 4.5385 2.3527 -2.2120 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104489975.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = -37.437240 kcal Electronic energy + Delta-G solvation = -14768.139216 eV Core-core repulsion = 12306.881044 eV Total energy + Delta-G solvation = -2461.258172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.42578 -37.23773 -34.62371 -33.29178 -29.53627 -29.39487 -27.71616 -25.56285 -25.20949 -22.22491 -20.98835 -19.32402 -17.07287 -16.41145 -15.68694 -15.37283 -15.05362 -14.87946 -14.51782 -13.66830 -13.34937 -12.80297 -12.49814 -12.38873 -11.75606 -11.55106 -11.42037 -11.11961 -11.02212 -10.84233 -10.56274 -10.34226 -9.58433 -9.48464 -9.43109 -9.15065 -8.21698 -7.38302 -7.33539 -6.74569 -4.33932 2.75880 2.96418 3.09078 3.14357 3.23584 3.94987 4.01935 4.63708 5.16609 5.31697 5.41795 5.53980 5.65348 5.67748 5.82151 5.89439 6.06423 6.17502 6.45483 6.52027 6.88922 7.08464 7.25401 7.32850 7.39669 7.54734 7.67234 7.90567 7.94871 8.06935 8.12749 8.30862 8.63701 8.91331 8.98466 10.20263 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.008485 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.471636 B = 3299.199909 C = 4027.450758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.032 3.968 4 C 0.147 3.853 5 H 0.085 0.915 6 N -0.834 5.834 7 C -0.066 4.066 8 C -0.223 4.223 9 C -0.098 4.098 10 C -0.224 4.224 11 C 0.108 3.892 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.796 5.796 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.149 4.149 21 H 0.036 0.964 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.335 0.665 27 H 0.337 0.663 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.279 0.721 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 -4.219 3.715 7.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.046 4.046 4 C 0.035 3.965 5 H 0.103 0.897 6 N -0.363 5.363 7 C -0.067 4.067 8 C -0.243 4.243 9 C -0.116 4.116 10 C -0.244 4.244 11 C 0.106 3.894 12 C -0.493 4.493 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.422 5.422 16 Si 0.730 3.270 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.201 1.201 20 C -0.169 4.169 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.101 -4.399 3.270 6.846 hybrid contribution -1.039 0.346 -0.556 1.228 sum -5.140 -4.053 2.714 7.086 Atomic orbital electron populations 1.22677 0.81682 1.02082 0.99872 1.87797 1.19273 1.29033 1.95472 1.23568 0.96436 0.83702 1.00892 1.20209 0.88423 0.94706 0.93145 0.89675 1.58930 1.67272 1.06195 1.03854 1.19087 1.00442 0.92631 0.94505 1.20044 1.11677 0.96207 0.96333 1.20482 0.99471 0.95425 0.96222 1.20997 1.10264 0.99259 0.93855 1.17579 0.89129 0.90426 0.92292 1.19585 1.19935 1.19787 0.90008 0.90446 1.25885 0.93840 0.93133 1.01210 1.69818 1.14988 1.27575 1.29788 0.86304 0.80711 0.79028 0.80935 1.18409 1.19701 1.20076 1.21175 1.03837 0.96628 0.95289 0.94548 0.94103 0.90075 0.92247 0.93679 0.85201 0.85132 0.89765 0.89497 0.89109 0.91017 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.40 -6.45 10.37 -35.23 -0.37 -6.81 16 3 C 0.03 0.57 5.51 37.16 0.20 0.78 16 4 C 0.15 2.88 3.28 -68.86 -0.23 2.65 16 5 H 0.09 1.77 7.99 -51.93 -0.41 1.35 16 6 N -0.83 -14.35 9.05 -5.66 -0.05 -14.40 16 7 C -0.07 -1.52 4.95 -104.70 -0.52 -2.03 16 8 C -0.22 -4.95 9.30 -39.29 -0.37 -5.31 16 9 C -0.10 -2.22 10.02 -39.66 -0.40 -2.62 16 10 C -0.22 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C 0.11 2.91 5.57 -106.82 -0.60 2.31 16 12 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 13 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.80 -20.52 10.95 55.55 0.61 -19.91 16 16 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 20 C -0.15 -3.88 8.31 -38.87 -0.32 -4.20 16 21 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.33 5.40 7.33 -39.29 -0.29 5.11 16 27 H 0.34 5.16 8.75 -39.29 -0.34 4.82 16 28 H 0.08 1.65 6.64 -52.49 -0.35 1.31 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 31 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 32 H 0.12 3.20 6.13 -52.49 -0.32 2.87 16 LS Contribution 273.10 15.07 4.12 4.12 Total: -1.00 -27.66 273.10 -6.87 -34.53 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.23 Total: 12.45 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -1.92 Total: -23.74 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.56 Total: -34.31 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.37 Total: -6.81 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.66 -6.87 -34.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104489975.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.910 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds