Wall clock time and date at job start Mon Mar 30 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46782 * 2 1 4 4 O 1.42899 * 109.47209 * 119.99359 * 2 1 3 5 5 C 1.52992 * 109.47251 * 239.99663 * 2 1 3 6 6 H 1.08999 * 109.47014 * 64.99918 * 5 2 1 7 7 N 1.46904 * 109.47289 * 304.99841 * 5 2 1 8 8 C 1.50704 * 109.47155 * 184.99668 * 5 2 1 9 9 C 1.37630 * 120.12585 * 100.02453 * 8 5 2 10 10 C 1.38617 * 120.24765 * 179.97438 * 9 8 5 11 11 C 1.38658 * 120.50142 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.24454 * 359.73182 * 11 10 9 13 13 C 1.40701 * 120.12740 * 279.99696 * 8 5 2 14 14 C 1.41398 * 120.24252 * 0.02562 * 13 8 5 15 15 H 1.07993 * 119.99912 * 334.16640 * 14 13 8 16 16 C 1.39946 * 119.99812 * 154.16700 * 14 13 8 17 17 N 1.30832 * 120.00122 * 343.61882 * 16 14 13 18 18 Si 1.86797 * 120.00107 * 163.61636 * 16 14 13 19 19 H 1.48497 * 109.47010 * 59.99790 * 18 16 14 20 20 H 1.48497 * 109.47062 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47071 * 300.00108 * 18 16 14 22 22 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47077 * 299.99847 * 1 2 3 24 24 H 1.08999 * 109.47522 * 60.00454 * 1 2 3 25 25 H 0.96704 * 113.99772 * 60.00444 * 4 2 1 26 26 H 1.00902 * 110.99943 * 176.04206 * 7 5 2 27 27 H 1.00893 * 110.99750 * 300.00166 * 7 5 2 28 28 H 1.08003 * 119.87871 * 359.97438 * 9 8 5 29 29 H 1.08005 * 119.74663 * 179.97438 * 10 9 8 30 30 H 1.08001 * 119.87324 * 179.97438 * 11 10 9 31 31 H 1.07998 * 120.12353 * 180.27359 * 12 11 10 32 32 H 0.96994 * 119.99932 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2491 6 1 1.7516 -0.1584 -2.1369 7 7 1.4543 -2.0671 -1.3110 8 6 3.5419 -0.8293 -1.1888 9 6 4.1343 -2.0055 -0.7890 10 6 5.5156 -2.1079 -0.7331 11 6 6.3158 -1.0292 -1.0778 12 6 5.7452 0.1548 -1.4851 13 6 4.3439 0.2716 -1.5414 14 6 3.7463 1.4850 -1.9537 15 1 2.7615 1.4787 -2.3967 16 6 4.4312 2.6941 -1.7876 17 7 5.4584 2.7585 -0.9798 18 14 3.8788 4.2160 -2.7191 19 1 2.4787 4.5428 -2.3476 20 1 4.7630 5.3573 -2.3714 21 1 3.9559 3.9577 -4.1795 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.7210 -1.5951 1.2330 26 1 1.7247 -2.5405 -2.1600 27 1 1.7072 -2.6091 -0.4984 28 1 3.5208 -2.8520 -0.5179 29 1 5.9720 -3.0346 -0.4179 30 1 7.3909 -1.1200 -1.0301 31 1 6.3703 0.9923 -1.7574 32 1 5.9333 3.5964 -0.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104497108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:57 Heat of formation + Delta-G solvation = -40.997397 kcal Electronic energy + Delta-G solvation = -15404.488033 eV Core-core repulsion = 12943.075481 eV Total energy + Delta-G solvation = -2461.412552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.63435 -36.54623 -33.75343 -33.31711 -30.06133 -29.69969 -28.65496 -25.44505 -24.51460 -21.03683 -20.74191 -19.25856 -17.28500 -16.43001 -15.72852 -15.17460 -14.85364 -14.10419 -13.67736 -13.47203 -13.05880 -12.64467 -12.52698 -12.03010 -11.61017 -11.53140 -11.19149 -11.16040 -10.95220 -10.74654 -10.45643 -10.11363 -9.63721 -9.46536 -9.38759 -9.17736 -8.15312 -7.35993 -7.32651 -6.74557 -4.36610 2.79232 2.97522 3.05896 3.08075 3.23394 3.92047 4.63154 5.00957 5.23784 5.50061 5.74549 5.81971 6.01522 6.09131 6.19358 6.31197 6.42929 6.43850 6.57772 6.74358 6.92310 7.09378 7.22773 7.31963 7.59069 7.61301 7.85621 7.90286 8.02979 8.08115 8.27453 8.32330 8.61206 8.88046 8.96710 10.19895 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.013035 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.960374 B = 2147.544011 C = 2997.312581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 H 0.107 0.893 4 O -0.554 6.554 5 C 0.123 3.877 6 H 0.084 0.916 7 N -0.844 5.844 8 C -0.213 4.213 9 C -0.090 4.090 10 C -0.239 4.239 11 C -0.108 4.108 12 C -0.161 4.161 13 C 0.122 3.878 14 C -0.465 4.465 15 H 0.078 0.922 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.357 0.643 26 H 0.339 0.661 27 H 0.328 0.672 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -3.319 -0.596 6.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.056 3.944 3 H 0.125 0.875 4 O -0.357 6.357 5 C 0.012 3.988 6 H 0.102 0.898 7 N -0.373 5.373 8 C -0.216 4.216 9 C -0.108 4.108 10 C -0.258 4.258 11 C -0.127 4.127 12 C -0.181 4.181 13 C 0.119 3.881 14 C -0.495 4.495 15 H 0.096 0.904 16 C -0.140 4.140 17 N -0.418 5.418 18 Si 0.728 3.272 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.189 1.189 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.202 0.798 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.371 -2.163 -0.368 5.802 hybrid contribution 0.730 -0.083 -0.472 0.873 sum -4.641 -2.246 -0.840 5.224 Atomic orbital electron populations 1.22382 0.97301 1.02339 1.01029 1.21943 0.91445 0.97151 0.83820 0.87522 1.86666 1.77362 1.27502 1.44173 1.20657 0.90106 0.89386 0.98701 0.89773 1.59201 1.65561 1.05317 1.07205 1.20176 0.94441 0.96089 1.10934 1.20191 0.94162 0.95983 1.00484 1.20305 0.93622 0.98131 1.13769 1.20678 0.97159 0.94259 1.00606 1.21316 0.95424 0.96318 1.05000 1.17369 0.91408 0.91479 0.87852 1.19474 1.03059 0.90612 1.36322 0.90435 1.25870 0.94060 1.00743 0.93359 1.69821 1.16846 1.28156 1.26991 0.86439 0.79616 0.80185 0.80945 1.18941 1.20382 1.18895 0.91758 0.93436 0.92354 0.79800 0.84940 0.85875 0.89998 0.89830 0.89671 0.86611 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.32 37.16 0.35 -2.38 16 2 C 0.12 2.22 3.43 -26.74 -0.09 2.12 16 3 H 0.11 2.36 7.46 -51.93 -0.39 1.97 16 4 O -0.55 -10.87 12.78 -35.23 -0.45 -11.32 16 5 C 0.12 2.37 2.39 -68.86 -0.16 2.21 16 6 H 0.08 1.72 6.74 -51.93 -0.35 1.37 16 7 N -0.84 -13.22 7.72 -5.65 -0.04 -13.26 16 8 C -0.21 -4.88 4.66 -103.91 -0.48 -5.36 16 9 C -0.09 -1.95 9.20 -39.66 -0.36 -2.32 16 10 C -0.24 -5.42 10.05 -39.29 -0.39 -5.81 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.00 16 12 C -0.16 -4.22 8.68 -38.88 -0.34 -4.55 16 13 C 0.12 3.15 5.56 -106.82 -0.59 2.56 16 14 C -0.47 -11.82 7.75 -37.74 -0.29 -12.11 16 15 H 0.08 1.87 6.47 -52.49 -0.34 1.53 16 16 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 17 N -0.79 -20.51 10.98 55.55 0.61 -19.90 16 18 Si 0.90 18.47 29.59 -169.99 -5.03 13.44 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 H 0.06 0.95 7.47 -51.92 -0.39 0.56 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.36 5.66 7.71 45.56 0.35 6.01 16 26 H 0.34 5.12 9.06 -39.29 -0.36 4.76 16 27 H 0.33 4.80 5.97 -39.30 -0.23 4.57 16 28 H 0.08 1.53 6.24 -52.48 -0.33 1.20 16 29 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.12 3.13 6.23 -52.49 -0.33 2.80 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 262.64 15.07 3.96 3.96 Total: -1.00 -27.45 262.64 -7.00 -34.45 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -3.18 Total: 19.45 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -2.86 Total: -26.83 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.57 Total: -33.16 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.45 Total: -11.32 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.45 -7.00 -34.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104497108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.543 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds