Wall clock time and date at job start Mon Mar 30 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31994 * 119.62231 * 2 1 4 4 C 1.32322 * 121.69706 * 180.02562 * 3 2 1 5 5 N 1.39311 * 119.62537 * 179.97438 * 4 3 2 6 6 C 1.46504 * 119.99992 * 4.99985 * 5 4 3 7 7 C 1.46501 * 120.00007 * 185.00241 * 5 4 3 8 8 C 1.50699 * 109.47038 * 90.00062 * 7 5 4 9 9 H 1.08000 * 120.00509 * 359.97438 * 8 7 5 10 10 C 1.37881 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31505 * 119.99971 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47033 * 90.00438 * 12 10 8 14 14 H 1.48494 * 109.47200 * 210.00162 * 12 10 8 15 15 H 1.48504 * 109.47389 * 330.00242 * 12 10 8 16 16 C 1.39083 * 120.74573 * 0.02562 * 4 3 2 17 17 C 1.38276 * 119.17525 * 359.72173 * 16 4 3 18 18 C 1.38625 * 119.62561 * 180.02562 * 2 1 3 19 19 N 1.40047 * 120.40521 * 359.97438 * 18 2 1 20 20 H 1.08998 * 109.47365 * 269.97771 * 1 2 3 21 21 H 1.08998 * 109.46811 * 29.97864 * 1 2 3 22 22 H 1.08997 * 109.46818 * 149.98020 * 1 2 3 23 23 H 1.09006 * 109.46997 * 90.00342 * 6 5 4 24 24 H 1.09002 * 109.47109 * 209.99548 * 6 5 4 25 25 H 1.08997 * 109.47602 * 329.99962 * 6 5 4 26 26 H 1.09004 * 109.46955 * 209.99872 * 7 5 4 27 27 H 1.08998 * 109.46855 * 330.00343 * 7 5 4 28 28 H 0.97007 * 120.00091 * 179.97438 * 11 10 8 29 29 H 1.08005 * 120.41301 * 179.97438 * 16 4 3 30 30 H 1.08003 * 120.78008 * 180.28889 * 17 16 4 31 31 H 0.97001 * 120.00365 * 0.02562 * 19 18 2 32 32 H 0.97005 * 119.99910 * 179.72110 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1595 1.1474 0.0000 4 6 3.4818 1.1953 -0.0005 5 7 4.1262 2.4305 -0.0010 6 6 3.3444 3.6645 0.1096 7 6 5.5855 2.4953 -0.1122 8 6 5.9755 2.5745 -1.5657 9 1 5.2127 2.5760 -2.3303 10 6 7.3063 2.6451 -1.9195 11 7 8.2352 2.6428 -0.9887 12 14 7.7897 2.7426 -3.7213 13 1 7.8597 4.1661 -4.1387 14 1 9.1170 2.1048 -3.9129 15 1 6.7768 2.0345 -4.5447 16 6 4.2357 0.0265 -0.0016 17 6 3.5864 -1.1943 0.0037 18 6 2.1923 -1.2050 -0.0005 19 7 1.4927 -2.4182 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 3.2304 3.9294 1.1608 24 1 3.8602 4.4695 -0.4140 25 1 2.3612 3.5130 -0.3357 26 1 5.9508 3.3792 0.4107 27 1 6.0238 1.6023 0.3334 28 1 9.1715 2.6922 -1.2376 29 1 5.3148 0.0719 -0.0024 30 1 4.1462 -2.1180 0.0077 31 1 0.5227 -2.4188 -0.0005 32 1 1.9782 -3.2581 -0.0050 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122051894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:53 Heat of formation + Delta-G solvation = 23.313820 kcal Electronic energy + Delta-G solvation = -14793.349557 eV Core-core repulsion = 12367.018500 eV Total energy + Delta-G solvation = -2426.331057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13263 -37.88480 -35.40593 -34.40835 -33.55739 -30.65436 -29.43867 -28.34948 -26.10035 -24.59144 -23.10181 -21.54564 -18.61922 -18.41559 -17.88251 -17.20742 -16.52714 -15.95642 -15.72956 -15.05596 -14.81314 -14.75738 -14.01751 -13.88359 -13.20754 -13.16780 -13.03763 -13.01830 -12.94677 -12.62963 -12.46638 -12.15584 -12.03065 -11.62103 -10.63862 -10.30355 -10.21019 -9.52540 -8.27254 -7.47524 -6.35429 0.49957 0.87079 1.38467 1.38874 1.50336 2.33948 2.52131 3.07635 3.15947 3.21302 3.73701 4.02166 4.31122 4.37503 4.63654 4.73911 4.78576 4.80736 4.86982 4.97354 5.03198 5.16174 5.23502 5.31449 5.41433 5.66730 5.78121 6.08909 6.32824 6.66751 6.78038 6.94110 7.20764 7.32592 7.54173 8.85040 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.007535 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.845783 B = 3715.217159 C = 4039.427725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.079 3.921 3 N -0.534 5.534 4 C 0.347 3.653 5 N -0.619 5.619 6 C 0.114 3.886 7 C 0.272 3.728 8 C -0.544 4.544 9 H 0.045 0.955 10 C 0.016 3.984 11 N -0.924 5.924 12 Si 0.961 3.039 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.211 4.211 17 C -0.111 4.111 18 C 0.100 3.900 19 N -0.864 5.864 20 H 0.084 0.916 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.014 0.986 27 H 0.018 0.982 28 H 0.268 0.732 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.405 0.595 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 -8.436 1.822 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 N -0.252 5.252 4 C 0.112 3.888 5 N -0.334 5.334 6 C -0.029 4.029 7 C 0.150 3.850 8 C -0.583 4.583 9 H 0.064 0.936 10 C -0.184 4.184 11 N -0.564 5.564 12 Si 0.786 3.214 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.199 1.199 16 C -0.236 4.236 17 C -0.142 4.142 18 C -0.007 4.007 19 N -0.411 5.411 20 H 0.102 0.898 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.167 0.833 31 H 0.236 0.764 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.240 -7.418 1.866 15.290 hybrid contribution 1.236 -0.673 -0.808 1.623 sum -12.004 -8.091 1.058 14.514 Atomic orbital electron populations 1.20569 0.86767 1.03600 1.03382 1.21041 0.97701 0.86184 1.01494 1.66827 1.07573 1.30232 1.20581 1.18363 0.88241 0.86615 0.95593 1.46661 1.06436 1.02465 1.77875 1.21313 0.95861 0.85837 0.99926 1.18822 0.74687 0.96144 0.95308 1.21776 0.92070 1.51078 0.93345 0.93638 1.25740 0.96154 0.94475 1.02013 1.70025 1.00991 1.50852 1.34543 0.85510 0.77568 0.78581 0.79727 1.19623 1.20118 1.19942 1.21370 1.00606 0.92291 1.09372 1.20984 0.92896 0.97657 1.02640 1.18226 0.91342 0.88568 1.02548 1.42091 1.08794 1.03301 1.86901 0.89767 0.91304 0.88990 0.93915 0.92681 0.91337 0.96789 0.96377 0.92286 0.86694 0.83349 0.76351 0.76707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.74 71.24 0.69 -1.19 16 2 C 0.08 2.56 6.80 42.63 0.29 2.85 16 3 N -0.53 -21.58 8.99 -180.72 -1.62 -23.20 16 4 C 0.35 15.73 7.38 132.97 0.98 16.71 16 5 N -0.62 -29.69 2.98 -732.99 -2.18 -31.87 16 6 C 0.11 4.66 10.50 127.77 1.34 6.00 16 7 C 0.27 14.70 5.00 85.63 0.43 15.13 16 8 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 9 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 10 C 0.02 0.88 5.46 84.66 0.46 1.35 16 11 N -0.92 -54.32 13.29 21.45 0.28 -54.03 16 12 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 C -0.21 -9.08 9.27 22.48 0.21 -8.87 16 17 C -0.11 -3.78 10.04 22.56 0.23 -3.55 16 18 C 0.10 2.96 6.76 38.20 0.26 3.22 16 19 N -0.86 -16.31 9.01 -51.00 -0.46 -16.77 16 20 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.09 1.44 6.53 -2.39 -0.02 1.43 16 23 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.05 2.24 8.07 -2.39 -0.02 2.22 16 25 H 0.07 2.67 7.30 -2.39 -0.02 2.65 16 26 H 0.01 0.80 8.07 -2.39 -0.02 0.78 16 27 H 0.02 1.04 5.98 -2.39 -0.01 1.02 16 28 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 29 H 0.12 5.44 6.02 -2.91 -0.02 5.42 16 30 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.41 5.66 6.83 -92.71 -0.63 5.02 16 32 H 0.40 6.00 8.86 -92.70 -0.82 5.18 16 Total: -1.00 -67.39 271.71 2.86 -64.53 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.31 Total: 14.22 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.13 Total: 0.57 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -3.98 Total: -125.87 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.39 2.86 -64.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122051894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.847 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds