Wall clock time and date at job start Mon Mar 30 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 C 1.50700 * 109.46724 * 239.99990 * 2 1 3 5 5 H 1.08001 * 120.00320 * 274.99551 * 4 2 1 6 6 C 1.37878 * 119.99967 * 94.99852 * 4 2 1 7 7 N 1.31515 * 120.00149 * 184.91227 * 6 4 2 8 8 Si 1.86798 * 119.99878 * 4.91321 * 6 4 2 9 9 H 1.48499 * 109.47243 * 84.83408 * 8 6 4 10 10 H 1.48504 * 109.47117 * 204.82955 * 8 6 4 11 11 H 1.48502 * 109.47387 * 324.83259 * 8 6 4 12 12 N 1.46901 * 109.47574 * 120.00395 * 2 1 3 13 13 C 1.46904 * 110.99584 * 274.99846 * 12 2 1 14 14 C 1.50702 * 109.46832 * 179.97438 * 13 12 2 15 15 C 1.38261 * 119.94706 * 89.99910 * 14 13 12 16 16 C 1.38145 * 120.05732 * 180.02562 * 15 14 13 17 17 C 1.38730 * 119.94392 * 359.97438 * 16 15 14 18 18 O 1.35901 * 120.05370 * 180.02562 * 17 16 15 19 19 C 1.38734 * 119.88800 * 0.28036 * 17 16 15 20 20 C 1.38144 * 119.94271 * 359.42396 * 19 17 16 21 21 H 1.09000 * 109.46512 * 295.04173 * 1 2 3 22 22 H 1.09002 * 109.47375 * 55.04157 * 1 2 3 23 23 H 1.08997 * 109.47511 * 175.04999 * 1 2 3 24 24 H 0.97000 * 120.00380 * 179.97438 * 7 6 4 25 25 H 1.00904 * 111.00003 * 38.94515 * 12 2 1 26 26 H 1.08998 * 109.47405 * 60.00183 * 13 12 2 27 27 H 1.08995 * 109.47161 * 299.99467 * 13 12 2 28 28 H 1.07998 * 119.97186 * 359.97438 * 15 14 13 29 29 H 1.08002 * 120.02339 * 179.97438 * 16 15 14 30 30 H 0.96701 * 113.99816 * 90.00441 * 18 17 16 31 31 H 1.08003 * 120.02442 * 179.71902 * 19 17 16 32 32 H 1.08002 * 119.97133 * 180.27578 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3601 0.0121 -2.3581 7 7 2.7057 -0.6132 -3.4623 8 14 2.3133 1.8790 -2.3175 9 1 3.5988 2.3949 -1.7823 10 1 2.1055 2.3990 -3.6929 11 1 1.1984 2.3274 -1.4450 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2226 2.3468 14 6 2.5876 -0.5219 3.5559 15 6 3.9442 -0.5739 3.8176 16 6 4.4096 -1.2561 4.9250 17 6 3.5145 -1.8890 5.7752 18 8 3.9699 -2.5603 6.8655 19 6 2.1541 -1.8398 5.5075 20 6 1.6933 -1.1511 4.4022 21 1 -0.3632 0.4350 0.9311 22 1 -0.3634 0.5888 -0.8422 23 1 -0.3634 -1.0238 -0.0887 24 1 2.9360 -0.1049 -4.2557 25 1 1.4496 -1.4980 1.4100 26 1 1.0872 0.6162 2.5526 27 1 2.7590 1.0461 2.1182 28 1 4.6407 -0.0814 3.1552 29 1 5.4695 -1.2967 5.1286 30 1 4.0371 -2.0166 7.6624 31 1 1.4556 -2.3355 6.1654 32 1 0.6340 -1.1088 4.1959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123061494.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:02 Heat of formation + Delta-G solvation = -45.950098 kcal Electronic energy + Delta-G solvation = -14376.542333 eV Core-core repulsion = 11914.915016 eV Total energy + Delta-G solvation = -2461.627317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67173 -38.43250 -37.16269 -34.49794 -32.42330 -31.89723 -29.57708 -27.24290 -25.55179 -23.70977 -22.22421 -21.86723 -19.30894 -19.11066 -17.08557 -16.76253 -16.51096 -16.05137 -15.82423 -15.24838 -14.66602 -14.54899 -14.30554 -14.06080 -13.85041 -13.16167 -12.98799 -12.90550 -12.70675 -12.53448 -12.33783 -11.78815 -11.76539 -11.34032 -11.17478 -10.68096 -9.89813 -9.47720 -8.94959 -8.24801 -6.27002 0.28993 0.44735 1.35669 1.37152 1.46845 2.36619 2.68749 3.08401 3.33440 3.74423 3.92619 4.03783 4.12412 4.38490 4.46267 4.49546 4.69105 4.71267 4.79990 4.84088 5.00104 5.06622 5.13249 5.37196 5.45333 5.48658 5.67932 5.74953 5.93482 6.07010 6.67946 6.76723 6.78632 6.90059 7.36986 8.92947 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048470 B = 0.005818 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.533127 B = 4811.282078 C = 4941.083971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.029 0.971 6 C 0.008 3.992 7 N -0.953 5.953 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.243 1.243 12 N -0.684 5.684 13 C 0.096 3.904 14 C -0.094 4.094 15 C -0.095 4.095 16 C -0.153 4.153 17 C 0.095 3.905 18 O -0.509 6.509 19 C -0.149 4.149 20 C -0.101 4.101 21 H 0.055 0.945 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.265 0.735 25 H 0.333 0.667 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.409 0.591 31 H 0.145 0.855 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 3.451 20.359 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.047 0.953 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.768 3.232 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.167 1.167 12 N -0.315 5.315 13 C -0.033 4.033 14 C -0.095 4.095 15 C -0.114 4.114 16 C -0.172 4.172 17 C 0.050 3.950 18 O -0.322 6.322 19 C -0.167 4.167 20 C -0.119 4.119 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.151 0.849 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.268 0.732 31 H 0.163 0.837 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.709 3.098 19.639 19.895 hybrid contribution -0.659 0.888 -0.167 1.119 sum -1.368 3.987 19.472 19.923 Atomic orbital electron populations 1.22486 0.98745 1.00963 1.00151 1.19514 0.90956 0.94003 0.88260 0.94438 1.21164 1.42282 0.93946 0.96172 0.95312 1.25884 0.94570 1.03620 0.94796 1.70060 1.48793 1.37882 1.02679 0.85799 0.79862 0.80014 0.77505 1.19513 1.21386 1.16682 1.60741 1.58399 1.09467 1.02861 1.20933 0.99510 0.94667 0.88163 1.19958 0.94068 0.99541 0.95923 1.21076 0.95277 0.98569 0.96499 1.21568 1.00795 0.98607 0.96186 1.18573 0.91511 0.94600 0.90282 1.84776 1.87461 1.39629 1.20367 1.21564 0.95137 1.00641 0.99408 1.21127 1.00230 0.96546 0.94044 0.92625 0.93889 0.93500 0.92648 0.84915 0.93683 0.91310 0.85725 0.84284 0.73187 0.83677 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.47 9.16 71.98 0.66 -5.81 16 2 C 0.18 8.26 2.23 44.17 0.10 8.36 16 3 H 0.04 1.71 4.95 -2.39 -0.01 1.69 16 4 C -0.50 -28.56 9.19 25.60 0.24 -28.32 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.46 5.47 84.65 0.46 0.92 16 7 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 8 Si 0.94 44.04 26.99 68.60 1.85 45.89 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.24 -10.27 6.82 99.48 0.68 -9.59 16 12 N -0.68 -27.48 6.22 -499.47 -3.11 -30.59 16 13 C 0.10 3.05 5.61 85.56 0.48 3.53 16 14 C -0.09 -2.68 5.39 -19.85 -0.11 -2.79 16 15 C -0.10 -2.65 9.69 22.25 0.22 -2.44 16 16 C -0.15 -3.73 9.99 22.37 0.22 -3.51 16 17 C 0.09 2.18 6.70 22.51 0.15 2.33 16 18 O -0.51 -9.76 13.50 -92.44 -1.25 -11.01 16 19 C -0.15 -3.30 9.99 22.37 0.22 -3.08 16 20 C -0.10 -2.45 9.69 22.25 0.22 -2.23 16 21 H 0.05 1.80 7.35 -2.39 -0.02 1.78 16 22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.33 12.79 8.47 -89.69 -0.76 12.03 16 26 H 0.05 1.28 7.30 -2.39 -0.02 1.27 16 27 H 0.07 2.23 8.00 -2.39 -0.02 2.22 16 28 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.41 3.43 9.06 -74.06 -0.67 2.76 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -69.11 274.86 0.32 -68.79 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.33 Total: 19.95 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 2.86 Total: -33.03 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -2.81 Total: -90.59 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.25 Total: -11.01 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.85 Total: 45.89 kcal Total: -69.11 0.32 -68.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123061494.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.841 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds