Wall clock time and date at job start Mon Mar 30 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00147 * 2 1 4 4 C 1.53002 * 109.47428 * 89.99285 * 3 2 1 5 5 H 1.09000 * 109.46986 * 60.00432 * 4 3 2 6 6 O 1.42898 * 109.47113 * 300.00392 * 4 3 2 7 7 C 1.50706 * 109.46931 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 4 3 9 9 C 1.37879 * 119.99398 * 180.02562 * 7 4 3 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 4 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00420 * 11 9 7 15 15 C 1.39676 * 120.00104 * 179.97438 * 2 1 3 16 16 C 1.38915 * 120.07525 * 179.72559 * 15 2 1 17 17 C 1.38106 * 119.92381 * 179.77499 * 16 15 2 18 18 C 1.38284 * 120.07499 * 0.50473 * 17 16 15 19 19 C 1.38289 * 120.15180 * 359.74871 * 18 17 16 20 20 C 1.38103 * 120.07205 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47119 * 90.00728 * 1 2 3 22 22 H 1.09007 * 109.46951 * 209.99896 * 1 2 3 23 23 H 1.08999 * 109.47527 * 330.00560 * 1 2 3 24 24 H 1.09004 * 109.47181 * 329.99537 * 3 2 1 25 25 H 1.09004 * 109.47212 * 209.99688 * 3 2 1 26 26 H 0.96701 * 113.99881 * 299.99463 * 6 4 3 27 27 H 0.97000 * 119.99706 * 359.97438 * 10 9 7 28 28 H 1.07998 * 120.03582 * 0.02562 * 16 15 2 29 29 H 1.07994 * 119.96230 * 180.25403 * 17 16 15 30 30 H 1.07997 * 119.92425 * 179.72767 * 18 17 16 31 31 H 1.07992 * 119.96748 * 179.97438 * 19 18 17 32 32 H 1.07994 * 120.04061 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0415 0.9509 1.9564 6 8 1.2037 1.8814 2.1160 7 6 3.2065 3.0153 1.4424 8 1 3.4765 3.4829 0.5070 9 6 3.5516 3.6121 2.6364 10 7 3.2232 3.0424 3.7754 11 14 4.4857 5.2298 2.6363 12 1 4.7343 5.6579 4.0364 13 1 5.7831 5.0523 1.9358 14 1 3.6830 6.2649 1.9368 15 6 2.1634 -1.2096 0.0005 16 6 3.5525 -1.2114 -0.0052 17 6 4.2399 -2.4092 0.0000 18 6 3.5469 -3.6059 0.0005 19 6 2.1640 -3.6078 0.0009 20 6 1.4704 -2.4136 0.0014 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6084 2.0283 -0.5139 25 1 3.1500 1.1383 -0.5138 26 1 0.6266 2.5441 1.7124 27 1 2.7378 2.2026 3.7754 28 1 4.0943 -0.2772 -0.0097 29 1 5.3198 -2.4113 -0.0003 30 1 4.0870 -4.5412 0.0001 31 1 1.6259 -4.5441 0.0008 32 1 0.3905 -2.4157 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141844054.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:02 Heat of formation + Delta-G solvation = -44.947673 kcal Electronic energy + Delta-G solvation = -14984.280039 eV Core-core repulsion = 12522.696190 eV Total energy + Delta-G solvation = -2461.583849 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54420 -38.47378 -36.38349 -34.29506 -32.14735 -31.02954 -30.21743 -27.40306 -25.58143 -23.66454 -22.88261 -21.48769 -19.44480 -18.53880 -17.23425 -16.59231 -16.29479 -15.79495 -15.78144 -15.38484 -15.04601 -14.55303 -14.27889 -14.20779 -13.82278 -13.43792 -12.90721 -12.69231 -12.50676 -12.27335 -12.18915 -11.95403 -11.65056 -11.61139 -10.77630 -10.65759 -10.08718 -9.80111 -8.66359 -8.08159 -6.50176 0.56343 0.76184 1.52399 1.59960 1.79247 2.27420 2.57000 3.03458 3.14664 3.88295 4.02029 4.03885 4.18194 4.31555 4.41312 4.45052 4.63953 4.66239 4.70364 4.85019 4.88165 4.93706 5.16191 5.35343 5.45462 5.63747 5.76194 5.77735 6.04450 6.10652 6.40754 6.52076 6.65532 7.15696 7.47692 8.72811 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.007542 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.441490 B = 3711.605908 C = 4097.409469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.630 5.630 3 C 0.119 3.881 4 C 0.205 3.795 5 H 0.008 0.992 6 O -0.586 6.586 7 C -0.660 4.660 8 H 0.056 0.944 9 C -0.017 4.017 10 N -0.920 5.920 11 Si 1.116 2.884 12 H -0.287 1.287 13 H -0.271 1.271 14 H -0.266 1.266 15 C 0.200 3.800 16 C -0.228 4.228 17 C -0.081 4.081 18 C -0.192 4.192 19 C -0.074 4.074 20 C -0.215 4.215 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.361 0.639 27 H 0.265 0.735 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -8.796 -9.520 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.338 5.338 3 C -0.005 4.005 4 C 0.147 3.853 5 H 0.026 0.974 6 O -0.391 6.391 7 C -0.698 4.698 8 H 0.074 0.926 9 C -0.219 4.219 10 N -0.556 5.556 11 Si 0.937 3.063 12 H -0.213 1.213 13 H -0.196 1.196 14 H -0.190 1.190 15 C 0.097 3.903 16 C -0.250 4.250 17 C -0.099 4.099 18 C -0.212 4.212 19 C -0.092 4.092 20 C -0.238 4.238 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.207 0.793 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.334 -7.960 -8.171 11.644 hybrid contribution -0.748 -0.555 -1.039 1.396 sum -3.082 -8.515 -9.211 12.917 Atomic orbital electron populations 1.21690 0.78620 1.03034 1.01162 1.46632 1.05756 1.02617 1.78842 1.21920 0.96540 0.84549 0.97474 1.19737 0.82253 0.94129 0.89200 0.97438 1.86458 1.30927 1.62523 1.59222 1.22803 1.41964 1.09579 0.95444 0.92563 1.27340 0.96345 1.06421 0.91838 1.70785 1.37018 1.19127 1.28671 0.82970 0.75769 0.71424 0.76103 1.21315 1.19584 1.19047 1.18250 0.91644 0.86763 0.93637 1.20882 0.93030 0.99101 1.12004 1.21140 1.00287 0.91882 0.96607 1.21182 0.94642 0.98046 1.07343 1.21234 0.94467 0.97633 0.95916 1.20912 1.00317 0.90998 1.11525 0.92215 0.91172 0.91573 0.90453 0.91488 0.79285 0.92445 0.87975 0.84947 0.83965 0.83334 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.86 9.93 127.77 1.27 4.13 16 2 N -0.63 -23.12 2.93 -722.17 -2.12 -25.24 16 3 C 0.12 4.88 4.80 86.38 0.41 5.30 16 4 C 0.21 10.46 2.70 29.85 0.08 10.54 16 5 H 0.01 0.46 8.01 -2.39 -0.02 0.44 16 6 O -0.59 -29.43 10.74 -148.98 -1.60 -31.03 16 7 C -0.66 -36.34 8.76 25.60 0.22 -36.12 16 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 9 C -0.02 -0.99 5.40 84.66 0.46 -0.54 16 10 N -0.92 -57.61 13.53 21.45 0.29 -57.32 16 11 Si 1.12 49.41 29.90 68.60 2.05 51.46 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 15 C 0.20 7.31 6.55 38.22 0.25 7.56 16 16 C -0.23 -8.49 9.21 22.40 0.21 -8.28 16 17 C -0.08 -2.50 10.04 22.25 0.22 -2.27 16 18 C -0.19 -5.09 10.04 22.29 0.22 -4.87 16 19 C -0.07 -1.93 10.04 22.25 0.22 -1.71 16 20 C -0.22 -6.55 9.21 22.40 0.21 -6.34 16 21 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 22 H 0.07 1.90 6.20 -2.38 -0.01 1.89 16 23 H 0.07 1.99 6.88 -2.39 -0.02 1.97 16 24 H 0.08 2.94 8.07 -2.39 -0.02 2.92 16 25 H 0.07 2.78 6.19 -2.38 -0.01 2.77 16 26 H 0.36 15.87 8.78 -74.06 -0.65 15.22 16 27 H 0.27 17.29 6.47 -92.71 -0.60 16.69 16 28 H 0.10 4.15 6.14 -2.91 -0.02 4.13 16 29 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.13 3.50 6.14 -2.91 -0.02 3.48 16 Total: -1.00 -67.49 268.03 3.04 -64.45 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.64 Total: 30.26 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 3.78 Total: -32.59 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.83 Total: -82.56 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.60 Total: -31.03 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Total: -67.49 3.04 -64.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141844054.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.498 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds