Wall clock time and date at job start Mon Mar 30 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48501 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46939 * 299.99901 * 3 2 1 6 6 H 1.48500 * 109.47178 * 59.99877 * 3 2 1 7 7 C 1.39885 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00689 * 195.16921 * 7 2 1 9 9 C 1.41030 * 120.00149 * 15.17048 * 7 2 1 10 10 C 1.40670 * 120.26786 * 25.74360 * 9 7 2 11 11 C 1.38001 * 119.77454 * 180.23248 * 10 9 7 12 12 N 1.39851 * 119.84656 * 179.77479 * 11 10 9 13 13 C 1.46498 * 120.00452 * 179.72306 * 12 11 10 14 14 C 1.52997 * 109.46865 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.46705 * 180.02562 * 14 13 12 16 16 C 1.39609 * 120.31491 * 359.49646 * 11 10 9 17 17 C 1.38055 * 120.55334 * 0.23912 * 16 11 10 18 18 C 1.38738 * 120.21807 * 0.02562 * 17 16 11 19 19 N 1.38864 * 120.16172 * 179.97438 * 18 17 16 20 20 H 0.97002 * 119.99521 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.11182 * 0.02562 * 10 9 7 22 22 H 0.97004 * 119.99369 * 359.72074 * 12 11 10 23 23 H 1.09003 * 109.46653 * 59.99761 * 13 12 11 24 24 H 1.08994 * 109.47085 * 300.00449 * 13 12 11 25 25 H 1.08998 * 109.47202 * 299.99650 * 14 13 12 26 26 H 1.08994 * 109.47709 * 60.00268 * 14 13 12 27 27 H 1.00900 * 111.00869 * 56.04292 * 15 14 13 28 28 H 1.00901 * 111.00075 * 180.02562 * 15 14 13 29 29 H 1.07997 * 119.72081 * 180.25029 * 16 11 10 30 30 H 1.07992 * 119.89141 * 180.02562 * 17 16 11 31 31 H 0.96995 * 119.99946 * 359.97438 * 19 18 17 32 32 H 0.96998 * 119.99745 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0602 -1.2278 0.2453 9 6 1.3401 -2.4117 -0.3185 10 6 0.1925 -2.3896 -1.1317 11 6 -0.4562 -3.5696 -1.4336 12 7 -1.6000 -3.5489 -2.2381 13 6 -2.2879 -4.8002 -2.5657 14 6 -3.4982 -4.4997 -3.4521 15 7 -4.1884 -5.7543 -3.7802 16 6 0.0271 -4.7846 -0.9445 17 6 1.1554 -4.8223 -0.1499 18 6 1.8221 -3.6490 0.1722 19 7 2.9566 -3.6881 0.9720 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1815 -1.4520 -1.5158 22 1 -1.9379 -2.7060 -2.5791 23 1 -2.6209 -5.2830 -1.6469 24 1 -1.6043 -5.4623 -3.0969 25 1 -4.1820 -3.8374 -2.9212 26 1 -3.1649 -4.0171 -4.3708 27 1 -4.4506 -6.2525 -2.9428 28 1 -4.9919 -5.5826 -4.3658 29 1 -0.4858 -5.7028 -1.1901 30 1 1.5202 -5.7681 0.2223 31 1 3.2845 -4.5372 1.3073 32 1 3.4207 -2.8664 1.1960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166382464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:56 Heat of formation + Delta-G solvation = 19.358139 kcal Electronic energy + Delta-G solvation = -14559.959192 eV Core-core repulsion = 12133.456604 eV Total energy + Delta-G solvation = -2426.502588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.97011 -36.13154 -34.00350 -33.42972 -31.44168 -29.38194 -27.81232 -25.27193 -24.55970 -22.11214 -20.70607 -19.65168 -17.08979 -16.31662 -15.71295 -15.43134 -15.17327 -14.82968 -14.57955 -13.87874 -13.43210 -12.79325 -12.34796 -12.15286 -11.85998 -11.62995 -11.30987 -11.12932 -11.02792 -10.96884 -10.34484 -9.85631 -9.70053 -9.30202 -9.05118 -8.78462 -7.74047 -7.19838 -6.59156 -5.51781 -4.04845 2.91277 3.14650 3.19151 3.32560 3.50271 4.04688 4.18856 4.83583 4.96235 5.20689 5.31234 5.45198 5.67981 5.91035 6.23560 6.28712 6.39857 6.67054 7.00535 7.14401 7.17825 7.31633 7.35128 7.51010 7.72490 7.91133 8.02678 8.14480 8.48094 8.77443 8.91892 8.96060 9.02248 9.28310 9.36393 10.39403 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028922 B = 0.007735 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.878231 B = 3619.135358 C = 4502.699878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.463 4.463 8 H 0.071 0.929 9 C 0.094 3.906 10 C -0.200 4.200 11 C 0.176 3.824 12 N -0.764 5.764 13 C 0.141 3.859 14 C 0.051 3.949 15 N -0.848 5.848 16 C -0.254 4.254 17 C -0.153 4.153 18 C 0.085 3.915 19 N -0.889 5.889 20 H 0.273 0.727 21 H 0.119 0.881 22 H 0.387 0.613 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.341 0.659 28 H 0.341 0.659 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.374 0.626 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 -4.019 -3.120 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.494 4.494 8 H 0.089 0.911 9 C 0.088 3.912 10 C -0.225 4.225 11 C 0.078 3.922 12 N -0.400 5.400 13 C 0.015 3.985 14 C -0.080 4.080 15 N -0.378 5.378 16 C -0.278 4.278 17 C -0.177 4.177 18 C -0.016 4.016 19 N -0.432 5.432 20 H 0.084 0.916 21 H 0.137 0.863 22 H 0.220 0.780 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.199 0.801 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.707 -4.233 -3.519 6.637 hybrid contribution -0.409 1.483 0.673 1.679 sum -4.116 -2.750 -2.846 5.710 Atomic orbital electron populations 1.69893 1.07247 1.28163 1.37613 1.25753 0.94680 1.00694 0.92891 0.86369 0.80858 0.81753 0.78251 1.18728 1.20054 1.20363 1.19169 0.96578 0.91001 1.42644 0.91063 1.16980 0.92682 0.90299 0.91202 1.20528 1.00978 0.95138 1.05820 1.17506 0.87300 0.94212 0.93214 1.44211 1.30422 1.06301 1.59018 1.20869 0.92536 0.88408 0.96694 1.21938 0.95674 0.90861 0.99543 1.58583 1.32691 1.23004 1.23547 1.19635 1.02308 0.94487 1.11345 1.19705 0.98641 0.94629 1.04741 1.17867 0.91567 0.93917 0.98262 1.41804 1.31797 1.09133 1.60419 0.91577 0.86301 0.78043 0.93934 0.92770 0.95230 0.90753 0.84659 0.84675 0.89675 0.89743 0.80109 0.78350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.15 10.88 55.55 0.60 -20.55 16 2 C 0.08 1.92 5.18 -17.33 -0.09 1.83 16 3 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.46 -12.30 8.50 -37.91 -0.32 -12.62 16 8 H 0.07 1.80 6.67 -52.49 -0.35 1.45 16 9 C 0.09 2.53 5.58 -106.65 -0.60 1.93 16 10 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 11 C 0.18 4.23 6.64 -83.77 -0.56 3.67 16 12 N -0.76 -15.14 5.74 -58.64 -0.34 -15.47 16 13 C 0.14 2.32 5.17 -4.04 -0.02 2.30 16 14 C 0.05 0.66 6.90 -3.83 -0.03 0.63 16 15 N -0.85 -9.32 9.62 -10.37 -0.10 -9.42 16 16 C -0.25 -5.97 9.31 -39.14 -0.36 -6.33 16 17 C -0.15 -3.60 9.86 -39.46 -0.39 -3.99 16 18 C 0.08 2.10 6.79 -83.22 -0.56 1.53 16 19 N -0.89 -18.52 8.98 32.75 0.29 -18.23 16 20 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 21 H 0.12 3.25 6.15 -52.48 -0.32 2.93 16 22 H 0.39 7.25 8.48 -40.82 -0.35 6.90 16 23 H 0.04 0.72 7.94 -51.93 -0.41 0.30 16 24 H 0.05 0.95 7.94 -51.93 -0.41 0.54 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.34 3.38 8.99 -39.29 -0.35 3.02 16 28 H 0.34 2.97 9.08 -39.29 -0.36 2.61 16 29 H 0.09 1.84 6.69 -52.49 -0.35 1.48 16 30 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 32 H 0.39 7.92 7.04 -40.82 -0.29 7.63 16 LS Contribution 269.01 15.07 4.05 4.05 Total: -1.00 -29.15 269.01 -7.73 -36.88 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -3.96 Total: 25.35 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -3.26 Total: -16.67 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.46 Total: -63.67 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.15 -7.73 -36.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.235 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds