Wall clock time and date at job start Mon Mar 30 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48501 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46939 * 299.99901 * 3 2 1 6 6 H 1.48500 * 109.47178 * 59.99877 * 3 2 1 7 7 C 1.39885 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00689 * 195.16921 * 7 2 1 9 9 C 1.41030 * 120.00149 * 15.17048 * 7 2 1 10 10 C 1.40670 * 120.26786 * 25.74360 * 9 7 2 11 11 C 1.38001 * 119.77454 * 180.23248 * 10 9 7 12 12 N 1.39851 * 119.84656 * 179.77479 * 11 10 9 13 13 C 1.46498 * 120.00452 * 179.72306 * 12 11 10 14 14 C 1.52997 * 109.46865 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.46705 * 180.02562 * 14 13 12 16 16 C 1.39609 * 120.31491 * 359.49646 * 11 10 9 17 17 C 1.38055 * 120.55334 * 0.23912 * 16 11 10 18 18 C 1.38738 * 120.21807 * 0.02562 * 17 16 11 19 19 N 1.38864 * 120.16172 * 179.97438 * 18 17 16 20 20 H 0.97002 * 119.99521 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.11182 * 0.02562 * 10 9 7 22 22 H 0.97004 * 119.99369 * 359.72074 * 12 11 10 23 23 H 1.09003 * 109.46653 * 59.99761 * 13 12 11 24 24 H 1.08994 * 109.47085 * 300.00449 * 13 12 11 25 25 H 1.08998 * 109.47202 * 299.99650 * 14 13 12 26 26 H 1.08994 * 109.47709 * 60.00268 * 14 13 12 27 27 H 1.00900 * 111.00869 * 56.04292 * 15 14 13 28 28 H 1.00901 * 111.00075 * 180.02562 * 15 14 13 29 29 H 1.07997 * 119.72081 * 180.25029 * 16 11 10 30 30 H 1.07992 * 119.89141 * 180.02562 * 17 16 11 31 31 H 0.96995 * 119.99946 * 359.97438 * 19 18 17 32 32 H 0.96998 * 119.99745 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0602 -1.2278 0.2453 9 6 1.3401 -2.4117 -0.3185 10 6 0.1925 -2.3896 -1.1317 11 6 -0.4562 -3.5696 -1.4336 12 7 -1.6000 -3.5489 -2.2381 13 6 -2.2879 -4.8002 -2.5657 14 6 -3.4982 -4.4997 -3.4521 15 7 -4.1884 -5.7543 -3.7802 16 6 0.0271 -4.7846 -0.9445 17 6 1.1554 -4.8223 -0.1499 18 6 1.8221 -3.6490 0.1722 19 7 2.9566 -3.6881 0.9720 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1815 -1.4520 -1.5158 22 1 -1.9379 -2.7060 -2.5791 23 1 -2.6209 -5.2830 -1.6469 24 1 -1.6043 -5.4623 -3.0969 25 1 -4.1820 -3.8374 -2.9212 26 1 -3.1649 -4.0171 -4.3708 27 1 -4.4506 -6.2525 -2.9428 28 1 -4.9919 -5.5826 -4.3658 29 1 -0.4858 -5.7028 -1.1901 30 1 1.5202 -5.7681 0.2223 31 1 3.2845 -4.5372 1.3073 32 1 3.4207 -2.8664 1.1960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166382464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:55 Heat of formation + Delta-G solvation = -2.966849 kcal Electronic energy + Delta-G solvation = -14560.927276 eV Core-core repulsion = 12133.456604 eV Total energy + Delta-G solvation = -2427.470672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76926 -37.57627 -35.45103 -35.25575 -33.01515 -31.29858 -29.34246 -27.01613 -26.25889 -23.59792 -22.34921 -21.46481 -18.94431 -17.89493 -17.28078 -16.93386 -16.74728 -16.31159 -16.18867 -15.19602 -14.84859 -14.46622 -14.13475 -13.75735 -13.65107 -13.23225 -13.08917 -12.75004 -12.69558 -12.37280 -12.07673 -11.72106 -11.38271 -11.17181 -10.94430 -9.68700 -9.42379 -9.14373 -8.49106 -7.31662 -6.00593 1.11543 1.42117 1.50532 1.55643 1.64768 2.27928 2.81922 2.93364 3.76990 3.88503 3.96128 4.04003 4.20784 4.52461 4.61576 4.84760 4.97459 5.01562 5.23933 5.34157 5.43410 5.66759 5.88088 6.06060 6.13383 6.17190 6.26981 6.55304 6.58802 6.97138 7.05274 7.12289 7.25402 7.47151 7.67291 8.51620 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028922 B = 0.007735 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.878231 B = 3619.135358 C = 4502.699878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.075 0.925 9 C 0.059 3.941 10 C -0.225 4.225 11 C 0.170 3.830 12 N -0.760 5.760 13 C 0.142 3.858 14 C 0.063 3.937 15 N -0.850 5.850 16 C -0.259 4.259 17 C -0.158 4.158 18 C 0.070 3.930 19 N -0.878 5.878 20 H 0.279 0.721 21 H 0.100 0.900 22 H 0.390 0.610 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.349 0.651 28 H 0.357 0.643 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.391 0.609 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 -4.440 -3.308 6.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.522 4.522 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.250 4.250 11 C 0.070 3.930 12 N -0.395 5.395 13 C 0.017 3.983 14 C -0.069 4.069 15 N -0.383 5.383 16 C -0.283 4.283 17 C -0.182 4.182 18 C -0.032 4.032 19 N -0.422 5.422 20 H 0.089 0.911 21 H 0.118 0.882 22 H 0.223 0.777 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.162 0.838 28 H 0.171 0.829 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.218 0.782 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.858 -4.690 -3.713 7.118 hybrid contribution -0.424 1.497 0.715 1.713 sum -4.282 -3.193 -2.998 6.125 Atomic orbital electron populations 1.69972 1.08709 1.29323 1.38201 1.26587 0.95450 1.03943 0.92062 0.85243 0.79489 0.77055 0.78330 1.18187 1.19656 1.19696 1.19432 0.96915 0.91895 1.43949 0.90720 1.17387 0.93518 0.91615 0.92091 1.20502 1.02016 0.95318 1.07149 1.17630 0.88226 0.93747 0.93387 1.44279 1.29419 1.07838 1.57976 1.20972 0.93416 0.86717 0.97217 1.21732 0.94468 0.91830 0.98832 1.58526 1.33604 1.21918 1.24216 1.19937 1.02439 0.94978 1.10973 1.20050 0.98442 0.95409 1.04345 1.18044 0.92697 0.93671 0.98811 1.41675 1.30714 1.10187 1.59659 0.91069 0.88173 0.77663 0.94024 0.93576 0.94642 0.90620 0.83822 0.82925 0.87705 0.87047 0.78169 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.90 10.88 21.82 0.24 -44.66 16 2 C 0.03 1.65 5.18 85.23 0.44 2.09 16 3 Si 0.98 39.33 29.59 68.60 2.03 41.36 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.49 -26.50 8.50 23.35 0.20 -26.30 16 8 H 0.07 3.82 6.67 -2.91 -0.02 3.80 16 9 C 0.06 3.25 5.58 -21.18 -0.12 3.13 16 10 C -0.23 -12.22 8.50 22.81 0.19 -12.03 16 11 C 0.17 8.22 6.64 38.14 0.25 8.47 16 12 N -0.76 -29.89 5.74 -339.44 -1.95 -31.84 16 13 C 0.14 4.49 5.17 86.38 0.45 4.94 16 14 C 0.06 1.51 6.90 86.30 0.60 2.11 16 15 N -0.85 -16.70 9.62 -186.73 -1.80 -18.50 16 16 C -0.26 -11.95 9.31 22.56 0.21 -11.74 16 17 C -0.16 -7.26 9.86 22.35 0.22 -7.04 16 18 C 0.07 3.44 6.79 38.97 0.26 3.71 16 19 N -0.88 -35.87 8.98 -50.31 -0.45 -36.32 16 20 H 0.28 13.71 8.30 -92.71 -0.77 12.94 16 21 H 0.10 5.71 6.15 -2.91 -0.02 5.69 16 22 H 0.39 14.64 8.48 -92.71 -0.79 13.86 16 23 H 0.04 1.33 7.94 -2.39 -0.02 1.32 16 24 H 0.05 1.55 7.94 -2.39 -0.02 1.53 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.35 6.09 8.99 -89.69 -0.81 5.28 16 28 H 0.36 5.30 9.08 -89.69 -0.81 4.48 16 29 H 0.10 4.33 6.69 -2.91 -0.02 4.31 16 30 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.39 13.14 8.83 -92.71 -0.82 12.32 16 32 H 0.39 15.73 7.04 -92.71 -0.65 15.07 16 Total: -1.00 -62.33 269.01 -1.91 -64.24 By element: Atomic # 1 Polarization: 61.08 SS G_CDS: -2.68 Total: 58.40 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 2.71 Total: -32.68 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -3.96 Total: -131.32 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -62.33 -1.91 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.275 kcal (2) G-P(sol) polarization free energy of solvation -62.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds