Wall clock time and date at job start Mon Mar 30 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48504 * 109.46710 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47093 * 300.00254 * 3 2 1 6 6 H 1.48501 * 109.47207 * 60.00421 * 3 2 1 7 7 C 1.40263 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.40375 * 119.99711 * 359.97438 * 7 2 1 10 10 N 1.33059 * 126.31742 * 0.26761 * 9 7 2 11 11 C 1.32234 * 109.80024 * 180.15034 * 10 9 7 12 12 N 1.31403 * 109.68247 * 359.60967 * 11 10 9 13 13 N 1.37028 * 126.31390 * 179.97438 * 9 7 2 14 14 C 1.46500 * 127.01522 * 359.97438 * 13 9 7 15 15 C 1.52997 * 109.47400 * 269.99544 * 14 13 9 16 16 C 1.54272 * 110.03226 * 292.17334 * 15 14 13 17 17 C 1.54885 * 104.19268 * 217.10271 * 16 15 14 18 18 C 1.54895 * 102.75140 * 37.93744 * 17 16 15 19 19 C 1.53869 * 110.03777 * 175.00136 * 15 14 13 20 20 H 0.96996 * 120.00140 * 359.97438 * 1 2 3 21 21 H 1.08002 * 125.16204 * 179.88573 * 11 10 9 22 22 H 1.09001 * 109.47414 * 29.99847 * 14 13 9 23 23 H 1.09003 * 109.46943 * 149.99734 * 14 13 9 24 24 H 1.09003 * 110.01232 * 53.60630 * 15 14 13 25 25 H 1.09004 * 110.48147 * 335.77378 * 16 15 14 26 26 H 1.08993 * 110.48759 * 98.42120 * 16 15 14 27 27 H 1.09004 * 110.75955 * 279.62551 * 17 16 15 28 28 H 1.08998 * 110.91545 * 156.32635 * 17 16 15 29 29 H 1.08999 * 110.48337 * 203.37791 * 18 17 16 30 30 H 1.09004 * 110.48405 * 80.73840 * 18 17 16 31 31 H 1.09002 * 110.03389 * 238.57142 * 19 15 14 32 32 H 1.09001 * 110.02799 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0078 -1.2147 -0.0005 8 1 3.0877 -1.2147 -0.0010 9 6 1.3059 -2.4304 -0.0005 10 7 -0.0166 -2.5768 -0.0051 11 6 -0.3249 -3.8626 -0.0002 12 7 0.7750 -4.5815 -0.0009 13 7 1.8564 -3.6852 -0.0015 14 6 3.2819 -4.0230 -0.0033 15 6 3.7765 -4.1403 -1.4464 16 6 3.1359 -5.3679 -2.1264 17 6 4.2626 -5.9354 -3.0249 18 6 5.5284 -5.7311 -2.1559 19 6 5.2977 -4.3713 -1.4652 20 1 -0.4850 0.8400 0.0004 21 1 -1.3285 -4.2616 -0.0005 22 1 3.8413 -3.2409 0.5100 23 1 3.4309 -4.9729 0.5102 24 1 3.5294 -3.2345 -2.0002 25 1 2.8357 -6.1038 -1.3804 26 1 2.2810 -5.0660 -2.7314 27 1 4.3370 -5.3708 -3.9544 28 1 4.1012 -6.9938 -3.2296 29 1 6.4195 -5.6944 -2.7826 30 1 5.6146 -6.5258 -1.4148 31 1 5.7888 -3.5780 -2.0289 32 1 5.6835 -4.4002 -0.4462 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213480998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:25 Heat of formation + Delta-G solvation = 41.066600 kcal Electronic energy + Delta-G solvation = -15096.615310 eV Core-core repulsion = 12671.054072 eV Total energy + Delta-G solvation = -2425.561239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.63948 -39.16427 -35.50985 -34.29506 -31.43174 -30.31484 -29.51334 -27.81010 -25.69940 -22.27489 -21.82707 -21.42027 -20.54705 -18.68782 -17.62876 -16.79327 -16.23850 -16.00730 -15.24105 -15.12323 -14.69110 -14.24697 -14.13146 -13.53072 -13.29461 -12.91478 -12.60807 -12.29689 -12.02757 -11.95834 -11.92350 -11.84640 -11.61498 -11.52284 -11.32754 -11.25091 -9.86373 -9.79196 -9.76216 -8.47988 -6.66806 1.24316 1.43928 1.60822 1.68244 2.17573 2.38429 2.67467 3.48206 3.66111 3.76366 3.80656 4.10334 4.28258 4.43318 4.44385 4.56706 4.65113 4.80545 4.82006 4.86766 4.95537 5.08754 5.10245 5.24834 5.27942 5.35549 5.46636 5.48893 5.68941 6.05762 6.39328 6.50422 6.81354 7.17876 8.28175 8.48742 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.009332 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.292294 B = 2999.635338 C = 3736.138034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.034 3.966 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.472 4.472 8 H 0.098 0.902 9 C 0.376 3.624 10 N -0.606 5.606 11 C 0.167 3.833 12 N -0.419 5.419 13 N -0.452 5.452 14 C 0.157 3.843 15 C -0.104 4.104 16 C -0.103 4.103 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.111 4.111 20 H 0.283 0.717 21 H 0.205 0.795 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 -3.978 -3.199 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.513 4.513 8 H 0.116 0.884 9 C 0.128 3.872 10 N -0.341 5.341 11 C -0.137 4.137 12 N -0.252 5.252 13 N -0.246 5.246 14 C 0.034 3.966 15 C -0.124 4.124 16 C -0.141 4.141 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.149 4.149 20 H 0.093 0.907 21 H 0.221 0.779 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.889 -4.479 -3.190 12.198 hybrid contribution -0.337 0.736 0.068 0.812 sum 10.552 -3.743 -3.122 11.624 Atomic orbital electron populations 1.70111 1.09205 1.29722 1.30774 1.26941 0.95663 1.04484 0.91738 0.84932 0.79449 0.75156 0.78755 1.16996 1.19222 1.19077 1.18863 0.94601 0.87802 1.50065 0.88361 1.21408 0.88127 0.86767 0.90913 1.71347 1.12258 1.16498 1.34030 1.25958 0.98686 0.89949 0.99058 1.77581 0.94383 1.17243 1.35977 1.50489 1.05515 1.03738 1.64869 1.21558 0.76352 1.01248 0.97407 1.22135 0.97058 0.98221 0.94964 1.22181 0.97143 0.96555 0.98224 1.22505 0.94468 1.00878 0.97891 1.22335 0.97601 0.96539 0.98737 1.22126 0.92219 0.98542 1.02013 0.90652 0.77897 0.89856 0.90191 0.93450 0.92605 0.95667 0.91604 0.90680 0.89692 0.90946 0.90765 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.76 11.93 21.88 0.26 -42.50 16 2 C 0.03 1.75 5.50 85.36 0.47 2.21 16 3 Si 1.00 37.33 29.56 68.60 2.03 39.35 16 4 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.47 -25.28 9.04 23.28 0.21 -25.07 16 8 H 0.10 4.77 7.24 -2.91 -0.02 4.74 16 9 C 0.38 21.46 7.51 133.83 1.01 22.47 16 10 N -0.61 -36.12 9.40 -198.06 -1.86 -37.98 16 11 C 0.17 8.86 12.97 180.87 2.35 11.21 16 12 N -0.42 -21.72 12.71 -61.45 -0.78 -22.51 16 13 N -0.45 -22.84 3.54 -345.17 -1.22 -24.06 16 14 C 0.16 6.16 5.35 86.38 0.46 6.62 16 15 C -0.10 -3.56 3.15 -10.07 -0.03 -3.59 16 16 C -0.10 -3.51 6.19 31.67 0.20 -3.31 16 17 C -0.12 -2.97 6.91 31.89 0.22 -2.74 16 18 C -0.11 -2.37 6.83 31.67 0.22 -2.16 16 19 C -0.11 -2.71 6.46 31.31 0.20 -2.50 16 20 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 21 H 0.20 9.05 8.06 -2.91 -0.02 9.03 16 22 H 0.08 3.09 7.45 -2.39 -0.02 3.07 16 23 H 0.08 2.90 8.00 -2.39 -0.02 2.88 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 2.02 7.76 -2.38 -0.02 2.00 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.71 7.67 -2.39 -0.02 1.69 16 Total: -1.00 -68.02 269.84 4.82 -63.20 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.10 Total: 21.35 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.30 Total: 3.13 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -3.60 Total: -127.04 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.35 kcal Total: -68.02 4.82 -63.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213480998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.271 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds