Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 113.99904 * 2 1 4 4 C 1.53008 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47133 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.04568 * 265.25116 * 5 4 3 7 7 C 1.38308 * 120.08482 * 180.27716 * 6 5 4 8 8 C 1.38356 * 120.18205 * 359.75214 * 7 6 5 9 9 C 1.38022 * 120.08844 * 359.97259 * 8 7 6 10 10 C 1.39057 * 120.04332 * 85.00639 * 5 4 3 11 11 N 1.39299 * 120.09035 * 359.97438 * 10 5 4 12 12 C 1.36850 * 119.99930 * 179.72591 * 11 10 5 13 13 H 1.08002 * 120.00407 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99643 * 179.72320 * 12 11 10 15 15 N 1.31594 * 120.00379 * 0.27469 * 14 12 11 16 16 Si 1.86803 * 119.99794 * 180.27644 * 14 12 11 17 17 H 1.48496 * 109.47187 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47428 * 120.00179 * 16 14 12 19 19 H 1.48498 * 109.47018 * 240.00050 * 16 14 12 20 20 H 1.09002 * 109.47546 * 299.99935 * 1 2 3 21 21 H 1.09003 * 109.47085 * 60.00424 * 1 2 3 22 22 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47470 * 60.00249 * 3 2 1 24 24 H 1.08998 * 109.47534 * 299.99985 * 3 2 1 25 25 H 1.09001 * 109.46337 * 59.99960 * 4 3 2 26 26 H 1.08998 * 109.47157 * 300.00621 * 4 3 2 27 27 H 1.07993 * 119.95525 * 0.02562 * 6 5 4 28 28 H 1.08004 * 119.90908 * 179.76613 * 7 6 5 29 29 H 1.07998 * 119.95399 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.04056 * 180.02562 * 9 8 7 31 31 H 0.97000 * 120.00272 * 359.72330 * 11 10 5 32 32 H 0.97000 * 119.99631 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5614 0.0000 6 6 4.5203 3.1520 -1.1913 7 6 5.0882 4.4131 -1.1924 8 6 5.2811 5.0901 -0.0013 9 6 4.9067 4.5090 1.1934 10 6 4.3353 3.2408 1.1988 11 7 3.9562 2.6508 2.4024 12 6 4.1462 3.3187 3.5816 13 1 4.5897 4.3035 3.5791 14 6 3.7631 2.7332 4.7803 15 7 3.2223 1.5336 4.7834 16 14 4.0154 3.6482 6.3892 17 1 4.6381 4.9682 6.1157 18 1 2.7037 3.8478 7.0562 19 1 4.9056 2.8556 7.2751 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.8573 0.6436 -0.8892 26 1 3.8567 0.6438 0.8908 27 1 4.3714 2.6268 -2.1231 28 1 5.3816 4.8708 -2.1256 29 1 5.7252 6.0745 -0.0063 30 1 5.0573 5.0383 2.1227 31 1 3.5575 1.7665 2.4047 32 1 2.9549 1.1243 5.6212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229543568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -29.608163 kcal Electronic energy + Delta-G solvation = -14755.007123 eV Core-core repulsion = 12294.088446 eV Total energy + Delta-G solvation = -2460.918677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78398 -37.31904 -34.96565 -32.71410 -31.71770 -28.59585 -27.71227 -25.85404 -24.66115 -22.77871 -20.97959 -19.97452 -17.61507 -16.57956 -16.02283 -15.63204 -14.78328 -14.68000 -14.52893 -13.93865 -13.10722 -13.03916 -12.58341 -12.50206 -12.12760 -11.64888 -11.54957 -11.20183 -10.99634 -10.77933 -10.55776 -10.41840 -10.20439 -10.15510 -9.70889 -9.27258 -8.72240 -7.84843 -6.68362 -6.54944 -3.73806 2.39194 2.62368 3.16273 3.16916 3.20601 4.05336 4.16272 4.71665 5.21770 5.28039 5.46311 5.52296 5.59978 5.76307 5.81937 5.84926 5.89216 6.03725 6.08861 6.25738 6.44593 6.53243 6.69538 6.97724 7.08700 7.27744 7.43039 7.53762 7.58246 7.63366 7.75754 8.13117 8.77020 9.37193 9.56248 10.61655 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.010521 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.661149 B = 2660.653875 C = 3990.958379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.066 3.934 4 C -0.057 4.057 5 C -0.215 4.215 6 C -0.053 4.053 7 C -0.250 4.250 8 C -0.064 4.064 9 C -0.223 4.223 10 C 0.216 3.784 11 N -0.561 5.561 12 C -0.302 4.302 13 H 0.102 0.898 14 C 0.019 3.981 15 N -0.891 5.891 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.280 1.280 20 H 0.040 0.960 21 H 0.035 0.965 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.401 0.599 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 0.812 -6.762 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.095 4.095 5 C -0.221 4.221 6 C -0.072 4.072 7 C -0.272 4.272 8 C -0.083 4.083 9 C -0.247 4.247 10 C 0.095 3.905 11 N -0.165 5.165 12 C -0.432 4.432 13 H 0.120 0.880 14 C -0.184 4.184 15 N -0.529 5.529 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.206 1.206 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.237 0.763 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.049 0.537 -6.244 6.593 hybrid contribution -0.327 0.289 0.899 0.999 sum -2.376 0.826 -5.345 5.907 Atomic orbital electron populations 1.22665 0.81810 1.02085 0.99761 1.87839 1.19135 1.29015 1.95426 1.22655 0.94470 0.83685 1.00231 1.20074 0.91970 0.94865 1.02550 1.18739 1.13648 0.97293 0.92453 1.20416 0.96603 0.94634 0.95509 1.20301 1.12646 0.97506 0.96781 1.20623 0.97322 0.97797 0.92551 1.20437 1.10156 0.96402 0.97728 1.17683 0.94704 0.92400 0.85734 1.41135 1.55097 1.17862 1.02365 1.19782 1.38141 1.01918 0.83348 0.88036 1.25285 0.97134 0.96221 0.99786 1.69704 1.40501 1.14280 1.28407 0.85788 0.78110 0.79282 0.81125 1.19235 1.20639 1.20596 0.94098 0.94604 0.90143 0.92956 0.93706 0.91487 0.91304 0.88144 0.88529 0.88214 0.86803 0.76292 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.40 -7.09 10.70 -35.23 -0.38 -7.47 16 3 C 0.07 1.21 5.92 37.16 0.22 1.43 16 4 C -0.06 -1.09 5.15 -27.88 -0.14 -1.23 16 5 C -0.21 -4.40 5.15 -104.38 -0.54 -4.94 16 6 C -0.05 -0.98 9.67 -39.62 -0.38 -1.37 16 7 C -0.25 -4.60 10.04 -39.51 -0.40 -5.00 16 8 C -0.06 -1.22 10.04 -39.62 -0.40 -1.62 16 9 C -0.22 -4.87 9.30 -39.34 -0.37 -5.23 16 10 C 0.22 4.96 6.60 -83.84 -0.55 4.41 16 11 N -0.56 -14.05 5.34 -9.60 -0.05 -14.10 16 12 C -0.30 -7.86 9.56 -15.11 -0.14 -8.00 16 13 H 0.10 2.55 5.68 -52.49 -0.30 2.25 16 14 C 0.02 0.48 5.50 -17.45 -0.10 0.39 16 15 N -0.89 -24.18 13.05 55.49 0.72 -23.46 16 16 Si 0.93 20.10 29.55 -169.99 -5.02 15.08 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 26 H 0.07 1.43 6.83 -51.93 -0.35 1.07 16 27 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 2.49 5.96 -52.48 -0.31 2.18 16 31 H 0.40 10.27 6.00 -40.82 -0.24 10.03 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 273.63 15.07 4.12 4.12 Total: -1.00 -27.39 273.63 -6.44 -33.82 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.15 Total: 11.59 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.69 Total: -19.58 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.67 Total: -37.56 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.38 Total: -7.47 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.39 -6.44 -33.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229543568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.215 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds