Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 113.99904 * 2 1 4 4 C 1.53008 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47133 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.04568 * 265.25116 * 5 4 3 7 7 C 1.38308 * 120.08482 * 180.27716 * 6 5 4 8 8 C 1.38356 * 120.18205 * 359.75214 * 7 6 5 9 9 C 1.38022 * 120.08844 * 359.97259 * 8 7 6 10 10 C 1.39057 * 120.04332 * 85.00639 * 5 4 3 11 11 N 1.39299 * 120.09035 * 359.97438 * 10 5 4 12 12 C 1.36850 * 119.99930 * 179.72591 * 11 10 5 13 13 H 1.08002 * 120.00407 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99643 * 179.72320 * 12 11 10 15 15 N 1.31594 * 120.00379 * 0.27469 * 14 12 11 16 16 Si 1.86803 * 119.99794 * 180.27644 * 14 12 11 17 17 H 1.48496 * 109.47187 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47428 * 120.00179 * 16 14 12 19 19 H 1.48498 * 109.47018 * 240.00050 * 16 14 12 20 20 H 1.09002 * 109.47546 * 299.99935 * 1 2 3 21 21 H 1.09003 * 109.47085 * 60.00424 * 1 2 3 22 22 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47470 * 60.00249 * 3 2 1 24 24 H 1.08998 * 109.47534 * 299.99985 * 3 2 1 25 25 H 1.09001 * 109.46337 * 59.99960 * 4 3 2 26 26 H 1.08998 * 109.47157 * 300.00621 * 4 3 2 27 27 H 1.07993 * 119.95525 * 0.02562 * 6 5 4 28 28 H 1.08004 * 119.90908 * 179.76613 * 7 6 5 29 29 H 1.07998 * 119.95399 * 179.97438 * 8 7 6 30 30 H 1.08004 * 120.04056 * 180.02562 * 9 8 7 31 31 H 0.97000 * 120.00272 * 359.72330 * 11 10 5 32 32 H 0.97000 * 119.99631 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5614 0.0000 6 6 4.5203 3.1520 -1.1913 7 6 5.0882 4.4131 -1.1924 8 6 5.2811 5.0901 -0.0013 9 6 4.9067 4.5090 1.1934 10 6 4.3353 3.2408 1.1988 11 7 3.9562 2.6508 2.4024 12 6 4.1462 3.3187 3.5816 13 1 4.5897 4.3035 3.5791 14 6 3.7631 2.7332 4.7803 15 7 3.2223 1.5336 4.7834 16 14 4.0154 3.6482 6.3892 17 1 4.6381 4.9682 6.1157 18 1 2.7037 3.8478 7.0562 19 1 4.9056 2.8556 7.2751 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.8573 0.6436 -0.8892 26 1 3.8567 0.6438 0.8908 27 1 4.3714 2.6268 -2.1231 28 1 5.3816 4.8708 -2.1256 29 1 5.7252 6.0745 -0.0063 30 1 5.0573 5.0383 2.1227 31 1 3.5575 1.7665 2.4047 32 1 2.9549 1.1243 5.6212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229543568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -45.557922 kcal Electronic energy + Delta-G solvation = -14755.698757 eV Core-core repulsion = 12294.088446 eV Total energy + Delta-G solvation = -2461.610311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40799 -38.70444 -36.70592 -34.28182 -33.51186 -30.14138 -29.32457 -27.13580 -26.49028 -24.27731 -22.65255 -21.55644 -19.43924 -18.22150 -17.42627 -17.11307 -16.40341 -16.27012 -15.95230 -15.53672 -14.74548 -14.66116 -14.13864 -13.99118 -13.68118 -13.41480 -13.07815 -12.72385 -12.52414 -12.25111 -12.16026 -12.10102 -11.86716 -11.72112 -11.36280 -10.65312 -10.54507 -9.42664 -8.44137 -8.43529 -5.69442 0.79241 1.00305 1.39577 1.47356 1.52877 2.28247 2.81810 2.99299 3.44943 3.52472 4.00809 4.23838 4.25690 4.37357 4.49483 4.52319 4.53579 4.61670 4.76592 4.79135 4.94414 4.97640 5.11708 5.28595 5.39980 5.49793 5.77897 5.93947 5.98267 6.06164 6.21160 6.52855 6.85685 7.57263 7.69094 8.74733 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.010521 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.661149 B = 2660.653875 C = 3990.958379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.076 3.924 4 C -0.053 4.053 5 C -0.217 4.217 6 C -0.055 4.055 7 C -0.231 4.231 8 C -0.065 4.065 9 C -0.245 4.245 10 C 0.195 3.805 11 N -0.591 5.591 12 C -0.316 4.316 13 H 0.102 0.898 14 C -0.035 4.035 15 N -0.934 5.934 16 Si 0.995 3.005 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.032 0.968 21 H 0.057 0.943 22 H 0.103 0.897 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.391 0.609 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 1.906 -9.158 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.000 4.000 4 C -0.091 4.091 5 C -0.224 4.224 6 C -0.073 4.073 7 C -0.252 4.252 8 C -0.084 4.084 9 C -0.270 4.270 10 C 0.078 3.922 11 N -0.198 5.198 12 C -0.446 4.446 13 H 0.119 0.881 14 C -0.233 4.233 15 N -0.575 5.575 16 Si 0.820 3.180 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.205 1.205 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.122 0.878 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.060 0.940 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.121 0.879 31 H 0.226 0.774 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.668 1.675 -8.705 9.020 hybrid contribution -0.393 0.022 1.291 1.350 sum -2.061 1.697 -7.413 7.879 Atomic orbital electron populations 1.22921 0.79737 1.03923 1.00445 1.87802 1.21449 1.28651 1.95522 1.22465 0.93936 0.83958 0.99686 1.20044 0.92622 0.94145 1.02292 1.19064 1.13084 0.97752 0.92460 1.20860 0.95467 0.95010 0.95993 1.20846 1.09621 0.96886 0.97894 1.21007 0.96457 0.99121 0.91765 1.20619 1.11197 0.96385 0.98761 1.18186 0.94773 0.93131 0.86118 1.41071 1.58005 1.17936 1.02802 1.20029 1.38150 1.02072 0.84315 0.88050 1.26124 0.97331 0.97061 1.02742 1.69824 1.42912 1.15938 1.28816 0.84805 0.77863 0.78320 0.77061 1.18248 1.20501 1.20532 0.94879 0.92401 0.87835 0.95899 0.91670 0.89149 0.93967 0.84611 0.84722 0.85079 0.87906 0.77415 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.65 10.70 -148.98 -1.59 -16.25 16 3 C 0.08 2.76 5.92 71.98 0.43 3.18 16 4 C -0.05 -2.01 5.15 29.85 0.15 -1.86 16 5 C -0.22 -8.66 5.15 -19.71 -0.10 -8.76 16 6 C -0.05 -1.83 9.67 22.25 0.22 -1.61 16 7 C -0.23 -7.39 10.04 22.31 0.22 -7.16 16 8 C -0.06 -2.28 10.04 22.25 0.22 -2.05 16 9 C -0.25 -10.60 9.30 22.43 0.21 -10.40 16 10 C 0.19 9.03 6.60 38.36 0.25 9.28 16 11 N -0.59 -31.02 5.34 -184.29 -0.98 -32.00 16 12 C -0.32 -17.16 9.56 84.04 0.80 -16.36 16 13 H 0.10 5.30 5.68 -2.91 -0.02 5.28 16 14 C -0.03 -1.87 5.50 84.86 0.47 -1.41 16 15 N -0.93 -53.29 13.05 21.65 0.28 -53.01 16 16 Si 1.00 42.57 29.55 68.60 2.03 44.59 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.09 2.92 8.05 -2.39 -0.02 2.91 16 26 H 0.04 1.81 6.83 -2.39 -0.02 1.79 16 27 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 28 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.10 4.59 5.96 -2.91 -0.02 4.57 16 31 H 0.39 21.37 6.00 -92.71 -0.56 20.81 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -60.82 273.63 4.41 -56.42 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.56 Total: 35.46 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 4.12 Total: -35.21 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -0.70 Total: -85.01 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.59 Total: -16.25 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -60.82 4.41 -56.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229543568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.857 kcal (2) G-P(sol) polarization free energy of solvation -60.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds