Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46961 * 2 1 4 4 C 1.50700 * 109.47175 * 119.99619 * 2 1 3 5 5 H 1.07995 * 120.00351 * 119.99652 * 4 2 1 6 6 C 1.37879 * 119.99723 * 300.00391 * 4 2 1 7 7 N 1.31514 * 119.99671 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00478 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46874 * 90.00239 * 8 6 4 10 10 H 1.48495 * 109.47106 * 210.00177 * 8 6 4 11 11 H 1.48498 * 109.46993 * 330.00701 * 8 6 4 12 12 O 1.42893 * 109.46978 * 239.99631 * 2 1 3 13 13 C 1.35906 * 116.99837 * 84.96936 * 12 2 1 14 14 C 1.38735 * 120.05279 * 174.27656 * 13 12 2 15 15 C 1.38150 * 119.94121 * 179.69857 * 14 13 12 16 16 C 1.38264 * 120.05223 * 0.59701 * 15 14 13 17 17 C 1.50700 * 119.94264 * 179.70153 * 16 15 14 18 18 N 1.46904 * 109.46860 * 269.97896 * 17 16 15 19 19 C 1.38262 * 120.11577 * 359.68003 * 16 15 14 20 20 C 1.38152 * 120.05560 * 0.02562 * 19 16 15 21 21 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47190 * 300.00631 * 1 2 3 23 23 H 1.09000 * 109.46825 * 59.99852 * 1 2 3 24 24 H 0.97001 * 120.00380 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.02861 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.97085 * 180.27691 * 15 14 13 27 27 H 1.09000 * 109.47540 * 29.97791 * 17 16 15 28 28 H 1.08997 * 109.47288 * 149.98069 * 17 16 15 29 29 H 1.00897 * 111.00372 * 56.05071 * 18 17 16 30 30 H 1.00905 * 110.99714 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.97405 * 179.97438 * 19 16 15 32 32 H 1.07997 * 120.02908 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8489 2.1773 1.4922 12 8 2.0063 -0.6737 -1.1667 13 6 2.1118 0.0624 -2.3043 14 6 2.6780 -0.4943 -3.4420 15 6 2.7784 0.2540 -4.5989 16 6 2.3266 1.5605 -4.6199 17 6 2.4435 2.3767 -5.8814 18 7 3.7325 3.0814 -5.8909 19 6 1.7672 2.1194 -3.4858 20 6 1.6589 1.3734 -2.3280 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.9025 -0.5282 4.4376 25 1 3.0358 -1.5131 -3.4245 26 1 3.2149 -0.1804 -5.4862 27 1 2.3833 1.7176 -6.7475 28 1 1.6319 3.1032 -5.9206 29 1 4.4995 2.4336 -5.7904 30 1 3.8352 3.6359 -6.7277 31 1 1.4154 3.1403 -3.5046 32 1 1.2223 1.8106 -1.4423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235077461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -13.156445 kcal Electronic energy + Delta-G solvation = -14654.060217 eV Core-core repulsion = 12193.854940 eV Total energy + Delta-G solvation = -2460.205277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67243 -37.45110 -34.40189 -33.16182 -31.06833 -30.28672 -29.22526 -25.34817 -24.45333 -22.81256 -21.43609 -20.13700 -17.61391 -16.68973 -16.20686 -15.69663 -14.94821 -14.64747 -14.42671 -14.19235 -13.72682 -13.23612 -13.07566 -12.68901 -12.29548 -12.19193 -11.82020 -11.60261 -11.16659 -10.91350 -10.57274 -10.29973 -10.02944 -9.74419 -9.17046 -8.82888 -8.73684 -8.63282 -7.55247 -6.24109 -4.26110 1.69241 1.79538 3.14669 3.22623 3.27223 4.05045 4.17757 4.22776 4.69519 4.96928 5.05067 5.06255 5.26150 5.40546 5.55959 5.69632 5.87114 6.01795 6.08518 6.22149 6.32776 6.37969 6.48921 6.62230 6.81909 6.84849 7.00373 7.09590 7.19436 7.31874 7.45752 8.04891 8.53686 8.85238 9.32944 10.88428 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048038 B = 0.006682 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.733154 B = 4189.304758 C = 4443.510163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.184 3.816 3 H 0.033 0.967 4 C -0.521 4.521 5 H 0.087 0.913 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.883 3.117 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.266 1.266 12 O -0.299 6.299 13 C 0.155 3.845 14 C -0.168 4.168 15 C -0.077 4.077 16 C -0.149 4.149 17 C 0.112 3.888 18 N -0.847 5.847 19 C -0.058 4.058 20 C -0.217 4.217 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.038 0.962 24 H 0.269 0.731 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.342 0.658 30 H 0.337 0.663 31 H 0.118 0.882 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 6.100 -16.315 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.129 3.871 3 H 0.051 0.949 4 C -0.559 4.559 5 H 0.105 0.895 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.192 1.192 12 O -0.211 6.211 13 C 0.107 3.893 14 C -0.186 4.186 15 C -0.095 4.095 16 C -0.149 4.149 17 C -0.018 4.018 18 N -0.377 5.377 19 C -0.076 4.076 20 C -0.236 4.236 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.145 6.248 -15.390 16.650 hybrid contribution -0.533 0.401 -0.456 0.808 sum -1.678 6.649 -15.847 17.267 Atomic orbital electron populations 1.22699 0.99128 1.02287 0.99609 1.20612 0.90314 0.93956 0.82252 0.94945 1.20757 1.33122 1.14823 0.87187 0.89540 1.24757 0.95678 0.96754 0.95273 1.69840 1.44742 1.39944 0.98004 0.86923 0.80800 0.83445 0.77577 1.20029 1.21681 1.19160 1.86187 1.79589 1.38717 1.16617 1.19298 0.91957 0.90177 0.87846 1.20389 1.05370 1.01261 0.91610 1.20678 0.98453 0.93478 0.96934 1.19453 1.05082 0.94599 0.95814 1.20549 0.92317 0.95282 0.93654 1.58738 1.04042 1.29648 1.45286 1.20721 0.96647 0.98612 0.91667 1.21463 1.07304 0.94910 0.99897 0.91595 0.92783 0.94279 0.92065 0.85548 0.86482 0.95236 0.90754 0.84543 0.85052 0.86429 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 8.65 37.16 0.32 -3.65 16 2 C 0.18 4.52 1.81 -27.88 -0.05 4.46 16 3 H 0.03 0.80 5.37 -51.93 -0.28 0.52 16 4 C -0.52 -14.97 9.47 -34.44 -0.33 -15.30 16 5 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 8 Si 0.88 21.24 24.37 -169.99 -4.14 17.09 16 9 H -0.27 -6.34 6.87 56.52 0.39 -5.96 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 12 O -0.30 -7.02 9.78 -19.44 -0.19 -7.21 16 13 C 0.16 3.09 6.60 -39.22 -0.26 2.83 16 14 C -0.17 -2.83 9.99 -39.43 -0.39 -3.23 16 15 C -0.08 -1.08 9.69 -39.60 -0.38 -1.46 16 16 C -0.15 -2.08 5.39 -104.60 -0.56 -2.64 16 17 C 0.11 1.21 6.91 -4.97 -0.03 1.17 16 18 N -0.85 -8.55 9.61 -11.41 -0.11 -8.66 16 19 C -0.06 -0.90 9.69 -39.60 -0.38 -1.29 16 20 C -0.22 -3.99 8.24 -39.43 -0.33 -4.32 16 21 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 22 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 23 H 0.04 0.75 6.91 -51.93 -0.36 0.39 16 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.34 3.29 8.99 -39.29 -0.35 2.93 16 30 H 0.34 2.55 9.08 -39.29 -0.36 2.19 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 2.47 5.43 -52.49 -0.29 2.18 16 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -30.52 264.03 -6.12 -36.65 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.94 Total: 5.40 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.50 Total: -21.27 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.66 Total: -34.63 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.19 Total: -7.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.52 -6.12 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235077461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.489 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds