Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46961 * 2 1 4 4 C 1.50700 * 109.47175 * 119.99619 * 2 1 3 5 5 H 1.07995 * 120.00351 * 119.99652 * 4 2 1 6 6 C 1.37879 * 119.99723 * 300.00391 * 4 2 1 7 7 N 1.31514 * 119.99671 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00478 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46874 * 90.00239 * 8 6 4 10 10 H 1.48495 * 109.47106 * 210.00177 * 8 6 4 11 11 H 1.48498 * 109.46993 * 330.00701 * 8 6 4 12 12 O 1.42893 * 109.46978 * 239.99631 * 2 1 3 13 13 C 1.35906 * 116.99837 * 84.96936 * 12 2 1 14 14 C 1.38735 * 120.05279 * 174.27656 * 13 12 2 15 15 C 1.38150 * 119.94121 * 179.69857 * 14 13 12 16 16 C 1.38264 * 120.05223 * 0.59701 * 15 14 13 17 17 C 1.50700 * 119.94264 * 179.70153 * 16 15 14 18 18 N 1.46904 * 109.46860 * 269.97896 * 17 16 15 19 19 C 1.38262 * 120.11577 * 359.68003 * 16 15 14 20 20 C 1.38152 * 120.05560 * 0.02562 * 19 16 15 21 21 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47190 * 300.00631 * 1 2 3 23 23 H 1.09000 * 109.46825 * 59.99852 * 1 2 3 24 24 H 0.97001 * 120.00380 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.02861 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.97085 * 180.27691 * 15 14 13 27 27 H 1.09000 * 109.47540 * 29.97791 * 17 16 15 28 28 H 1.08997 * 109.47288 * 149.98069 * 17 16 15 29 29 H 1.00897 * 111.00372 * 56.05071 * 18 17 16 30 30 H 1.00905 * 110.99714 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.97405 * 179.97438 * 19 16 15 32 32 H 1.07997 * 120.02908 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8489 2.1773 1.4922 12 8 2.0063 -0.6737 -1.1667 13 6 2.1118 0.0624 -2.3043 14 6 2.6780 -0.4943 -3.4420 15 6 2.7784 0.2540 -4.5989 16 6 2.3266 1.5605 -4.6199 17 6 2.4435 2.3767 -5.8814 18 7 3.7325 3.0814 -5.8909 19 6 1.7672 2.1194 -3.4858 20 6 1.6589 1.3734 -2.3280 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.9025 -0.5282 4.4376 25 1 3.0358 -1.5131 -3.4245 26 1 3.2149 -0.1804 -5.4862 27 1 2.3833 1.7176 -6.7475 28 1 1.6319 3.1032 -5.9206 29 1 4.4995 2.4336 -5.7904 30 1 3.8352 3.6359 -6.7277 31 1 1.4154 3.1403 -3.5046 32 1 1.2223 1.8106 -1.4423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235077461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -35.707902 kcal Electronic energy + Delta-G solvation = -14655.038122 eV Core-core repulsion = 12193.854940 eV Total energy + Delta-G solvation = -2461.183182 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10644 -38.86834 -35.64280 -34.94504 -32.81566 -31.71132 -30.45242 -27.35225 -25.60150 -24.20754 -22.91443 -21.55944 -19.33783 -18.58883 -17.40805 -17.16383 -16.31743 -16.04744 -15.77854 -15.50771 -14.89635 -14.85799 -14.46240 -14.42500 -13.85018 -13.69401 -13.22987 -13.10627 -12.85949 -12.31027 -12.19976 -11.89475 -11.68789 -11.56002 -11.17537 -10.85564 -9.90745 -9.56312 -8.94213 -8.44217 -6.53638 0.43850 0.51241 1.24487 1.30017 1.40671 2.19980 2.56131 2.82357 2.89523 3.88080 3.92160 4.00253 4.05060 4.20235 4.37932 4.43159 4.45410 4.49069 4.64885 4.73595 4.81996 4.89634 5.13742 5.27021 5.33117 5.39062 5.57997 5.68275 5.87530 6.06831 6.27888 6.49901 6.67646 6.80385 7.11558 8.72713 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048038 B = 0.006682 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.733154 B = 4189.304758 C = 4443.510163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.191 3.809 3 H 0.034 0.966 4 C -0.542 4.542 5 H 0.034 0.966 6 C 0.024 3.976 7 N -0.936 5.936 8 Si 0.949 3.051 9 H -0.254 1.254 10 H -0.285 1.285 11 H -0.245 1.245 12 O -0.329 6.329 13 C 0.111 3.889 14 C -0.176 4.176 15 C -0.067 4.067 16 C -0.135 4.135 17 C 0.114 3.886 18 N -0.858 5.858 19 C -0.062 4.062 20 C -0.229 4.229 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.275 0.725 25 H 0.129 0.871 26 H 0.155 0.845 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.345 0.655 30 H 0.353 0.647 31 H 0.139 0.861 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 8.479 -19.011 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.135 3.865 3 H 0.051 0.949 4 C -0.580 4.580 5 H 0.053 0.947 6 C -0.175 4.175 7 N -0.574 5.574 8 Si 0.773 3.227 9 H -0.179 1.179 10 H -0.212 1.212 11 H -0.169 1.169 12 O -0.243 6.243 13 C 0.065 3.935 14 C -0.194 4.194 15 C -0.086 4.086 16 C -0.136 4.136 17 C -0.016 4.016 18 N -0.390 5.390 19 C -0.080 4.080 20 C -0.248 4.248 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.147 0.853 26 H 0.172 0.828 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.121 8.629 -18.133 20.193 hybrid contribution -0.092 -0.386 0.216 0.452 sum -2.214 8.243 -17.917 19.846 Atomic orbital electron populations 1.22565 0.97003 1.02390 1.01001 1.20317 0.91770 0.93023 0.81371 0.94893 1.20999 1.33098 1.13871 0.90015 0.94728 1.25707 0.96989 1.00367 0.94401 1.69988 1.46424 1.42187 0.98842 0.85854 0.79381 0.79077 0.78356 1.17902 1.21160 1.16875 1.86101 1.80943 1.39796 1.17489 1.19670 0.95046 0.91291 0.87471 1.20647 1.05097 1.01904 0.91797 1.21069 0.97239 0.93345 0.96918 1.19920 1.02424 0.94705 0.96562 1.20568 0.93037 0.95591 0.92374 1.58680 1.03790 1.29913 1.46607 1.21014 0.96491 0.99376 0.91168 1.21476 1.07926 0.94548 1.00800 0.92245 0.92624 0.91374 0.91594 0.85303 0.82781 0.93023 0.89824 0.84246 0.83236 0.84302 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.48 8.65 71.98 0.62 -6.86 16 2 C 0.19 9.56 1.81 29.85 0.05 9.62 16 3 H 0.03 1.64 5.37 -2.39 -0.01 1.63 16 4 C -0.54 -32.71 9.47 25.60 0.24 -32.47 16 5 H 0.03 2.35 8.06 -2.91 -0.02 2.33 16 6 C 0.02 1.43 5.45 84.66 0.46 1.89 16 7 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 8 Si 0.95 43.45 24.37 68.60 1.67 45.13 16 9 H -0.25 -10.79 6.87 99.48 0.68 -10.11 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.24 -10.31 6.53 99.48 0.65 -9.66 16 12 O -0.33 -16.08 9.78 -92.49 -0.90 -16.98 16 13 C 0.11 4.45 6.60 22.51 0.15 4.60 16 14 C -0.18 -5.79 9.99 22.37 0.22 -5.57 16 15 C -0.07 -1.69 9.69 22.25 0.22 -1.47 16 16 C -0.14 -3.29 5.39 -19.85 -0.11 -3.40 16 17 C 0.11 1.93 6.91 85.56 0.59 2.52 16 18 N -0.86 -13.84 9.61 -190.00 -1.83 -15.66 16 19 C -0.06 -1.76 9.69 22.25 0.22 -1.55 16 20 C -0.23 -8.18 8.24 22.37 0.18 -7.99 16 21 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 22 H 0.06 2.36 3.27 -2.39 -0.01 2.36 16 23 H 0.07 2.52 6.91 -2.39 -0.02 2.51 16 24 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 26 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 28 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 29 H 0.34 5.32 8.99 -89.70 -0.81 4.51 16 30 H 0.35 3.91 9.08 -89.69 -0.81 3.10 16 31 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.12 4.46 5.43 -2.91 -0.02 4.44 16 Total: -1.00 -69.27 264.03 1.54 -67.74 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.56 Total: 18.59 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 2.85 Total: -40.67 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.53 Total: -73.80 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.90 Total: -16.98 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.67 Total: 45.13 kcal Total: -69.27 1.54 -67.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235077461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.028 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds