Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47378 * 2 1 4 4 C 1.50701 * 109.46957 * 239.99664 * 2 1 3 5 5 H 1.08001 * 120.00022 * 240.00315 * 4 2 1 6 6 C 1.37870 * 120.00048 * 60.00084 * 4 2 1 7 7 N 1.31523 * 120.00085 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47309 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47290 * 120.00105 * 8 6 4 11 11 H 1.48505 * 109.47409 * 240.00235 * 8 6 4 12 12 O 1.42901 * 109.46690 * 119.99859 * 2 1 3 13 13 C 1.35894 * 117.00000 * 275.05806 * 12 2 1 14 14 C 1.38740 * 120.05806 * 185.69898 * 13 12 2 15 15 C 1.38146 * 119.94426 * 180.29793 * 14 13 12 16 16 C 1.38264 * 120.05220 * 359.45279 * 15 14 13 17 17 C 1.50706 * 119.94019 * 180.27692 * 16 15 14 18 18 N 1.46896 * 109.47447 * 89.99978 * 17 16 15 19 19 C 1.38263 * 120.11802 * 0.29704 * 16 15 14 20 20 C 1.38147 * 120.05485 * 359.97438 * 19 16 15 21 21 H 1.09008 * 109.47568 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47580 * 300.00141 * 1 2 3 23 23 H 1.09005 * 109.47424 * 60.00213 * 1 2 3 24 24 H 0.96994 * 119.99687 * 179.97438 * 7 6 4 25 25 H 1.08000 * 120.02687 * 0.04567 * 14 13 12 26 26 H 1.08000 * 119.97252 * 179.72746 * 15 14 13 27 27 H 1.09001 * 109.46918 * 210.00127 * 17 16 15 28 28 H 1.09001 * 109.47174 * 329.99615 * 17 16 15 29 29 H 1.00899 * 111.00382 * 56.04050 * 18 17 16 30 30 H 1.00892 * 111.00203 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.97358 * 180.02562 * 19 16 15 32 32 H 1.07994 * 120.03343 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 3.1473 -2.2866 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1861 -4.8160 12 8 2.0062 -0.6736 1.1668 13 6 2.1112 0.0623 2.3044 14 6 2.6767 -0.4944 3.4425 15 6 2.7767 0.2539 4.5994 16 6 2.3239 1.5601 4.6205 17 6 2.4399 2.3761 5.8823 18 7 3.7284 3.0813 5.8928 19 6 1.7646 2.1189 3.4863 20 6 1.6573 1.3731 2.3284 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 0.7095 1.1616 -3.4844 25 1 3.0349 -1.5131 3.4251 26 1 3.2128 -0.1804 5.4869 27 1 1.6279 3.1023 5.9212 28 1 2.3794 1.7168 6.7482 29 1 3.8361 3.6502 5.0664 30 1 3.8305 3.6356 6.7296 31 1 1.4121 3.1396 3.5052 32 1 1.2200 1.8098 1.4427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235434547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = -23.577941 kcal Electronic energy + Delta-G solvation = -14577.164916 eV Core-core repulsion = 12116.507729 eV Total energy + Delta-G solvation = -2460.657187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.47814 -37.23896 -34.29870 -33.21485 -30.68118 -29.74665 -28.84548 -25.38400 -24.33197 -22.63320 -21.26423 -20.08497 -17.30116 -16.62582 -16.08283 -15.24775 -14.77879 -14.59477 -14.22153 -14.05010 -13.74088 -13.14586 -12.78089 -12.39075 -12.02410 -11.78455 -11.28544 -11.16039 -11.02147 -10.82964 -10.60256 -10.28538 -10.09031 -9.85961 -8.99345 -8.75561 -8.55167 -8.48491 -7.37641 -6.22212 -4.27458 1.83937 1.93611 3.22421 3.29676 3.35613 4.15739 4.23017 4.57285 4.78201 5.06872 5.11873 5.16924 5.41710 5.51931 5.67881 5.84738 6.04027 6.23138 6.48947 6.53624 6.74315 6.78447 6.85564 6.95847 6.98374 7.08859 7.25087 7.36965 7.41547 7.63645 7.78812 8.09513 8.53168 8.86541 9.38666 10.85717 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055252 B = 0.005889 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.649026 B = 4753.858291 C = 4860.897820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.207 3.793 3 H 0.034 0.966 4 C -0.515 4.515 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.314 6.314 13 C 0.160 3.840 14 C -0.174 4.174 15 C -0.062 4.062 16 C -0.152 4.152 17 C 0.113 3.887 18 N -0.848 5.848 19 C -0.075 4.075 20 C -0.213 4.213 21 H 0.038 0.962 22 H 0.017 0.983 23 H 0.097 0.903 24 H 0.265 0.735 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.342 0.658 30 H 0.336 0.664 31 H 0.112 0.888 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 3.569 12.200 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.153 3.847 3 H 0.052 0.948 4 C -0.553 4.553 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.738 3.262 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.227 6.227 13 C 0.111 3.889 14 C -0.192 4.192 15 C -0.080 4.080 16 C -0.153 4.153 17 C -0.017 4.017 18 N -0.377 5.377 19 C -0.094 4.094 20 C -0.232 4.232 21 H 0.057 0.943 22 H 0.036 0.964 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.403 2.746 11.996 12.386 hybrid contribution -0.480 0.748 -0.967 1.314 sum 0.922 3.494 11.029 11.606 Atomic orbital electron populations 1.22320 0.98195 1.00560 1.01201 1.20298 0.91283 0.93448 0.79665 0.94835 1.21045 1.32012 1.13416 0.88833 0.91272 1.24873 0.94881 0.95115 0.99095 1.69887 1.36400 1.22739 1.24056 0.86226 0.78652 0.79578 0.81765 1.19440 1.20725 1.20737 1.86156 1.79671 1.39710 1.17197 1.19288 0.91565 0.90119 0.87890 1.20437 1.05777 1.01203 0.91830 1.20636 0.97236 0.93289 0.96887 1.19423 1.05248 0.95299 0.95331 1.20539 0.89556 0.95804 0.95832 1.58736 1.34548 1.37084 1.07379 1.20729 0.97824 0.98656 0.92189 1.21477 1.06893 0.94962 0.99821 0.94256 0.96368 0.88463 0.92506 0.85790 0.86271 0.95339 0.90815 0.84514 0.85161 0.86991 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 8.95 37.16 0.33 -3.72 16 2 C 0.21 5.40 2.22 -27.88 -0.06 5.34 16 3 H 0.03 0.92 6.31 -51.93 -0.33 0.59 16 4 C -0.52 -14.48 8.89 -34.44 -0.31 -14.79 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 O -0.31 -7.74 9.78 -19.41 -0.19 -7.93 16 13 C 0.16 3.38 6.60 -39.21 -0.26 3.12 16 14 C -0.17 -3.16 9.99 -39.43 -0.39 -3.55 16 15 C -0.06 -0.97 9.69 -39.61 -0.38 -1.35 16 16 C -0.15 -2.28 5.39 -104.60 -0.56 -2.85 16 17 C 0.11 1.31 6.91 -4.97 -0.03 1.28 16 18 N -0.85 -9.17 9.61 -11.41 -0.11 -9.28 16 19 C -0.08 -1.22 9.69 -39.61 -0.38 -1.61 16 20 C -0.21 -4.17 8.24 -39.43 -0.33 -4.49 16 21 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 22 H 0.02 0.39 6.91 -51.93 -0.36 0.03 16 23 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 25 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.34 3.65 8.99 -39.29 -0.35 3.30 16 30 H 0.34 2.76 9.08 -39.30 -0.36 2.40 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.13 2.78 5.43 -52.49 -0.28 2.49 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -29.04 270.84 -7.16 -36.20 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.07 Total: 6.07 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.47 Total: -21.02 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.52 Total: -33.47 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.19 Total: -7.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.04 -7.16 -36.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235434547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.622 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds