Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47378 * 2 1 4 4 C 1.50701 * 109.46957 * 239.99664 * 2 1 3 5 5 H 1.08001 * 120.00022 * 240.00315 * 4 2 1 6 6 C 1.37870 * 120.00048 * 60.00084 * 4 2 1 7 7 N 1.31523 * 120.00085 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47309 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47290 * 120.00105 * 8 6 4 11 11 H 1.48505 * 109.47409 * 240.00235 * 8 6 4 12 12 O 1.42901 * 109.46690 * 119.99859 * 2 1 3 13 13 C 1.35894 * 117.00000 * 275.05806 * 12 2 1 14 14 C 1.38740 * 120.05806 * 185.69898 * 13 12 2 15 15 C 1.38146 * 119.94426 * 180.29793 * 14 13 12 16 16 C 1.38264 * 120.05220 * 359.45279 * 15 14 13 17 17 C 1.50706 * 119.94019 * 180.27692 * 16 15 14 18 18 N 1.46896 * 109.47447 * 89.99978 * 17 16 15 19 19 C 1.38263 * 120.11802 * 0.29704 * 16 15 14 20 20 C 1.38147 * 120.05485 * 359.97438 * 19 16 15 21 21 H 1.09008 * 109.47568 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47580 * 300.00141 * 1 2 3 23 23 H 1.09005 * 109.47424 * 60.00213 * 1 2 3 24 24 H 0.96994 * 119.99687 * 179.97438 * 7 6 4 25 25 H 1.08000 * 120.02687 * 0.04567 * 14 13 12 26 26 H 1.08000 * 119.97252 * 179.72746 * 15 14 13 27 27 H 1.09001 * 109.46918 * 210.00127 * 17 16 15 28 28 H 1.09001 * 109.47174 * 329.99615 * 17 16 15 29 29 H 1.00899 * 111.00382 * 56.04050 * 18 17 16 30 30 H 1.00892 * 111.00203 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.97358 * 180.02562 * 19 16 15 32 32 H 1.07994 * 120.03343 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 3.1473 -2.2866 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1861 -4.8160 12 8 2.0062 -0.6736 1.1668 13 6 2.1112 0.0623 2.3044 14 6 2.6767 -0.4944 3.4425 15 6 2.7767 0.2539 4.5994 16 6 2.3239 1.5601 4.6205 17 6 2.4399 2.3761 5.8823 18 7 3.7284 3.0813 5.8928 19 6 1.7646 2.1189 3.4863 20 6 1.6573 1.3731 2.3284 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 0.7095 1.1616 -3.4844 25 1 3.0349 -1.5131 3.4251 26 1 3.2128 -0.1804 5.4869 27 1 1.6279 3.1023 5.9212 28 1 2.3794 1.7168 6.7482 29 1 3.8361 3.6502 5.0664 30 1 3.8305 3.6356 6.7296 31 1 1.4121 3.1396 3.5052 32 1 1.2200 1.8098 1.4427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235434547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = -42.858939 kcal Electronic energy + Delta-G solvation = -14578.001003 eV Core-core repulsion = 12116.507729 eV Total energy + Delta-G solvation = -2461.493274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.00805 -38.76767 -35.66121 -34.94818 -32.22883 -31.40130 -30.31404 -27.45419 -25.53597 -24.15989 -22.84638 -21.59151 -19.00224 -18.55300 -17.30625 -16.81563 -16.35020 -15.91640 -15.75682 -15.33550 -15.22350 -14.75539 -14.21947 -13.75015 -13.62650 -13.43734 -13.09304 -12.91647 -12.77036 -12.45254 -12.20737 -12.13372 -11.73162 -11.64473 -10.99578 -10.60745 -9.88325 -9.57578 -8.89468 -8.30378 -6.45192 0.46282 0.54142 1.39815 1.40310 1.54260 2.29843 2.79359 2.86852 3.01213 3.87596 3.95393 4.00677 4.11305 4.36149 4.48901 4.52360 4.67713 4.77229 4.79548 4.84451 4.91688 5.16312 5.20776 5.41228 5.50115 5.58823 5.69308 5.70653 6.00710 6.04167 6.25567 6.55738 6.66892 6.90438 7.26800 8.77209 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055252 B = 0.005889 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.649026 B = 4753.858291 C = 4860.897820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.214 3.786 3 H 0.012 0.988 4 C -0.549 4.549 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.271 1.271 11 H -0.272 1.272 12 O -0.339 6.339 13 C 0.114 3.886 14 C -0.178 4.178 15 C -0.057 4.057 16 C -0.137 4.137 17 C 0.115 3.885 18 N -0.856 5.856 19 C -0.074 4.074 20 C -0.228 4.228 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.271 0.729 25 H 0.131 0.869 26 H 0.152 0.848 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.343 0.657 30 H 0.353 0.647 31 H 0.139 0.861 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 4.086 13.795 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.801 3.199 9 H -0.194 1.194 10 H -0.196 1.196 11 H -0.197 1.197 12 O -0.253 6.253 13 C 0.068 3.932 14 C -0.197 4.197 15 C -0.076 4.076 16 C -0.138 4.138 17 C -0.015 4.015 18 N -0.387 5.387 19 C -0.093 4.093 20 C -0.247 4.247 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.170 0.830 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.864 3.282 13.628 14.141 hybrid contribution -0.592 0.673 -1.281 1.563 sum 1.272 3.955 12.347 13.027 Atomic orbital electron populations 1.22118 0.97487 1.00076 1.01093 1.20011 0.91754 0.92118 0.80197 0.97061 1.21312 1.33067 1.13755 0.90522 0.92525 1.25717 0.94693 0.95705 1.01805 1.69979 1.36600 1.23508 1.25103 0.85212 0.78393 0.78458 0.77823 1.19370 1.19600 1.19746 1.86067 1.80904 1.40463 1.17878 1.19685 0.94640 0.91170 0.87734 1.20678 1.05327 1.01922 0.91746 1.21036 0.96297 0.93407 0.96835 1.19898 1.02409 0.95309 0.96153 1.20564 0.90608 0.96132 0.94173 1.58683 1.33913 1.37742 1.08382 1.21016 0.97354 0.99564 0.91341 1.21430 1.07786 0.94909 1.00539 0.94739 0.94666 0.90170 0.91971 0.85143 0.83006 0.93684 0.89187 0.84466 0.83220 0.84350 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.65 8.95 71.98 0.64 -7.01 16 2 C 0.21 11.69 2.22 29.85 0.07 11.76 16 3 H 0.01 0.68 6.31 -2.39 -0.02 0.66 16 4 C -0.55 -32.01 8.89 25.60 0.23 -31.78 16 5 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.71 11.32 21.45 0.24 -51.47 16 8 Si 0.98 43.53 29.54 68.60 2.03 45.55 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 O -0.34 -17.49 9.78 -92.36 -0.90 -18.39 16 13 C 0.11 4.97 6.60 22.51 0.15 5.11 16 14 C -0.18 -6.39 9.99 22.37 0.22 -6.17 16 15 C -0.06 -1.65 9.69 22.25 0.22 -1.43 16 16 C -0.14 -3.70 5.39 -19.85 -0.11 -3.81 16 17 C 0.12 2.19 6.91 85.56 0.59 2.79 16 18 N -0.86 -15.31 9.61 -190.00 -1.83 -17.14 16 19 C -0.07 -2.30 9.69 22.25 0.22 -2.08 16 20 C -0.23 -9.11 8.24 22.37 0.18 -8.92 16 21 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.03 1.60 6.91 -2.39 -0.02 1.59 16 23 H 0.08 4.34 6.07 -2.38 -0.01 4.32 16 24 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 26 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 27 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 28 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 29 H 0.34 6.22 8.99 -89.69 -0.81 5.41 16 30 H 0.35 4.43 9.08 -89.70 -0.81 3.62 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.11 4.92 5.43 -2.91 -0.02 4.91 16 Total: -1.00 -63.86 270.84 1.91 -61.95 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.48 Total: 19.44 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 2.86 Total: -39.95 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -1.58 Total: -68.60 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.90 Total: -18.39 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -63.86 1.91 -61.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235434547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.090 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds