Wall clock time and date at job start Mon Mar 30 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00017 * 2 1 4 4 H 1.48496 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47310 * 299.99962 * 3 2 1 6 6 H 1.48502 * 109.47464 * 59.99566 * 3 2 1 7 7 C 1.37872 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00520 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47477 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47439 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47488 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00435 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47160 * 179.97438 * 13 12 11 15 15 C 1.38615 * 120.07365 * 95.26083 * 14 13 12 16 16 C 1.38880 * 117.96717 * 180.28685 * 15 14 13 17 17 C 1.38611 * 117.96736 * 359.45738 * 16 15 14 18 18 N 1.31938 * 119.84568 * 0.28403 * 17 16 15 19 19 N 1.28349 * 122.18457 * 359.97438 * 18 17 16 20 20 H 0.96994 * 119.99784 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47148 * 59.99205 * 9 7 2 22 22 H 1.09005 * 109.47038 * 299.99678 * 9 7 2 23 23 H 1.09000 * 109.47036 * 59.99688 * 10 9 7 24 24 H 1.09000 * 109.47175 * 300.00112 * 10 9 7 25 25 H 1.09000 * 109.47080 * 59.99937 * 11 10 9 26 26 H 1.09005 * 109.47238 * 299.99842 * 11 10 9 27 27 H 1.00904 * 110.99632 * 303.95515 * 12 11 10 28 28 H 1.08995 * 109.47365 * 59.99681 * 13 12 11 29 29 H 1.09001 * 109.46627 * 299.99769 * 13 12 11 30 30 H 1.08005 * 121.02224 * 0.02562 * 15 14 13 31 31 H 1.08002 * 121.02028 * 179.74070 * 16 15 14 32 32 H 1.08000 * 120.08030 * 180.29881 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 1.7347 -7.3950 0.0018 14 6 2.7442 -8.5139 0.0018 15 6 3.1279 -9.1032 1.1963 16 6 4.0657 -10.1264 1.1461 17 6 4.5513 -10.5026 -0.0965 18 7 4.1235 -9.8874 -1.1824 19 7 3.2607 -8.9384 -1.1355 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8540 -5.0446 0.8914 27 1 3.0698 -6.0369 -0.7796 28 1 1.1101 -7.4697 -0.8883 29 1 1.1095 -7.4692 0.8916 30 1 2.7135 -8.7740 2.1378 31 1 4.4028 -10.6172 2.0471 32 1 5.2779 -11.2977 -0.1756 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236168650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:35 Heat of formation + Delta-G solvation = 40.616222 kcal Electronic energy + Delta-G solvation = -13778.207490 eV Core-core repulsion = 11352.626722 eV Total energy + Delta-G solvation = -2425.580768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15822 -36.69438 -34.05277 -33.31950 -32.65038 -30.81911 -27.35978 -25.24233 -24.77215 -22.79345 -22.06525 -20.14712 -17.60051 -17.15518 -16.40026 -15.91674 -15.47958 -15.12790 -14.49707 -14.01847 -13.93170 -13.54073 -13.03911 -12.67272 -12.13508 -11.68851 -11.43832 -11.03683 -10.84952 -10.58633 -10.48828 -10.45385 -10.10426 -9.85180 -9.69218 -9.32882 -9.03513 -8.33476 -8.28940 -5.98267 -4.00165 0.60608 0.70090 3.32749 3.33442 3.40115 3.44893 3.80112 4.24499 4.36764 4.46353 4.48945 4.59965 4.76115 5.02035 5.22706 5.37747 5.52144 5.56360 5.75553 5.82733 5.94298 5.99888 6.29778 6.68633 6.72299 7.12973 7.22407 7.50733 7.70101 7.84426 8.02243 8.45533 8.53954 9.07234 9.63901 11.13256 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.069356 B = 0.003855 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.617308 B = 7261.280957 C = 7370.158329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.686 5.686 13 C 0.109 3.891 14 C 0.080 3.920 15 C -0.099 4.099 16 C -0.121 4.121 17 C 0.031 3.969 18 N -0.244 5.244 19 N -0.241 5.241 20 H 0.259 0.741 21 H 0.015 0.985 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.344 0.656 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -20.057 3.383 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.318 5.318 13 C -0.022 4.022 14 C -0.065 4.065 15 C -0.129 4.129 16 C -0.150 4.150 17 C -0.133 4.133 18 N -0.085 5.085 19 N -0.084 5.084 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.162 0.838 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.481 -19.792 2.396 20.676 hybrid contribution 0.101 0.701 0.773 1.048 sum 5.582 -19.091 3.169 20.142 Atomic orbital electron populations 1.69976 1.06055 1.26450 1.51144 1.25032 0.94857 0.99287 0.95394 0.86536 0.80151 0.83782 0.77543 1.19724 1.21038 1.21030 1.21296 0.93114 0.91041 1.50189 0.92610 1.19074 0.94004 0.91333 0.97188 1.21631 0.99245 0.92818 1.00848 1.22176 0.94030 0.90413 1.00281 1.60657 1.20376 1.00395 1.50348 1.20776 0.92439 0.86473 1.02536 1.22892 0.96632 0.96417 0.90530 1.22336 0.95860 0.94614 1.00076 1.22443 0.96064 0.96726 0.99812 1.24313 0.99180 0.99690 0.90124 1.73035 1.05526 1.02569 1.27387 1.72959 1.04286 1.06142 1.25022 0.93096 0.96703 0.96520 0.92541 0.93523 0.95241 0.91186 0.83826 0.92843 0.89044 0.83026 0.83266 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.24 5.41 -26.74 -0.14 -2.38 16 11 C 0.06 1.01 5.69 -3.83 -0.02 0.98 16 12 N -0.69 -10.12 6.49 -115.06 -0.75 -10.87 16 13 C 0.11 1.33 6.02 -4.98 -0.03 1.30 16 14 C 0.08 0.97 6.38 -82.41 -0.53 0.44 16 15 C -0.10 -0.92 9.85 -39.20 -0.39 -1.31 16 16 C -0.12 -0.92 10.21 -39.21 -0.40 -1.32 16 17 C 0.03 0.28 11.31 -17.37 -0.20 0.09 16 18 N -0.24 -3.19 11.50 30.55 0.35 -2.84 16 19 N -0.24 -3.41 11.43 33.59 0.38 -3.02 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.34 5.21 8.72 -39.29 -0.34 4.87 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -32.55 281.98 -6.83 -39.38 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.53 Total: -1.83 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.25 Total: -15.48 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.72 Total: -43.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.55 -6.83 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236168650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.993 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds