Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48504 * 109.47162 * 269.99876 * 3 2 1 5 5 H 1.48497 * 109.47454 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.47119 * 149.99971 * 3 2 1 7 7 C 1.37877 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00590 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47185 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47111 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99855 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47055 * 179.97438 * 13 12 11 15 15 C 1.38624 * 120.44417 * 94.99492 * 14 13 12 16 16 C 1.38574 * 118.39673 * 179.70022 * 15 14 13 17 17 N 1.32345 * 119.10916 * 0.28037 * 16 15 14 18 18 C 1.31789 * 120.81651 * 359.97438 * 17 16 15 19 19 N 1.31809 * 121.75220 * 0.02562 * 18 17 16 20 20 H 0.96998 * 119.99910 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47084 * 59.99589 * 9 7 2 22 22 H 1.09010 * 109.46961 * 299.99814 * 9 7 2 23 23 H 1.09004 * 109.47449 * 59.99736 * 10 9 7 24 24 H 1.08996 * 109.47391 * 299.99604 * 10 9 7 25 25 H 1.08997 * 109.47276 * 59.99905 * 11 10 9 26 26 H 1.09001 * 109.47400 * 299.99807 * 11 10 9 27 27 H 1.00900 * 110.99903 * 303.95063 * 12 11 10 28 28 H 1.09001 * 109.46935 * 59.99579 * 13 12 11 29 29 H 1.08999 * 109.47081 * 299.99449 * 13 12 11 30 30 H 1.08002 * 120.80485 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.45088 * 180.29937 * 16 15 14 32 32 H 1.08001 * 119.12241 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0043 13 6 1.7344 -7.3950 0.0044 14 6 2.7439 -8.5140 0.0057 15 6 3.1362 -9.1046 1.1968 16 6 4.0623 -10.1343 1.1481 17 7 4.5426 -10.5133 -0.0254 18 6 4.1502 -9.9249 -1.1374 19 7 3.2712 -8.9426 -1.1296 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8904 23 1 2.8712 -3.6040 0.8923 24 1 2.8725 -3.6048 -0.8877 25 1 0.8539 -5.0455 -0.8877 26 1 0.8531 -5.0442 0.8922 27 1 3.0702 -6.0374 -0.7766 28 1 1.1105 -7.4700 -0.8863 29 1 1.1085 -7.4689 0.8937 30 1 2.7266 -8.7734 2.1397 31 1 4.3877 -10.6212 2.0556 32 1 4.5596 -10.2563 -2.0803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236168781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = 10.051137 kcal Electronic energy + Delta-G solvation = -13779.181545 eV Core-core repulsion = 11352.275375 eV Total energy + Delta-G solvation = -2426.906170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.93271 -37.97551 -35.81227 -34.64297 -33.53296 -32.42274 -28.96708 -26.78919 -25.31604 -24.22384 -23.17188 -21.91926 -18.61246 -18.46265 -17.85218 -16.81799 -16.58726 -16.32072 -16.08496 -15.45412 -15.11577 -14.77323 -14.35132 -14.23101 -13.51288 -13.25096 -13.14455 -12.67045 -12.46950 -12.26680 -11.83157 -11.74991 -11.54037 -11.38670 -11.13780 -10.57631 -10.54807 -10.24812 -9.49367 -8.19997 -6.30787 -0.05422 0.08338 1.40576 1.41781 1.53160 2.41314 2.71490 3.01378 3.13238 3.29750 3.40060 3.56644 4.03339 4.17545 4.23898 4.30630 4.47077 4.59270 4.66172 4.71993 4.88483 4.97197 5.08369 5.23662 5.44491 5.51889 5.75153 5.86137 5.91710 6.03264 6.26224 6.28696 6.86070 7.11077 7.38407 8.91879 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.069431 B = 0.003847 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.182150 B = 7277.444350 C = 7385.218253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.683 5.683 13 C 0.105 3.895 14 C 0.165 3.835 15 C -0.205 4.205 16 C 0.144 3.856 17 N -0.541 5.541 18 C 0.283 3.717 19 N -0.542 5.542 20 H 0.264 0.736 21 H -0.008 1.008 22 H -0.004 1.004 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.342 0.658 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.172 0.828 31 H 0.202 0.798 32 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -19.568 1.909 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.056 4.056 12 N -0.314 5.314 13 C -0.024 4.024 14 C 0.019 3.981 15 C -0.227 4.227 16 C -0.021 4.021 17 N -0.255 5.255 18 C -0.005 4.005 19 N -0.257 5.257 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.014 0.986 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.189 0.811 31 H 0.219 0.781 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.208 -19.753 1.732 20.778 hybrid contribution -0.558 1.267 -0.325 1.422 sum 5.650 -18.487 1.408 19.382 Atomic orbital electron populations 1.70090 1.07745 1.27782 1.51720 1.25978 0.95798 1.03347 0.94731 0.85448 0.78679 0.78451 0.78484 1.19811 1.20615 1.18810 1.21706 0.93517 0.92509 1.50502 0.92383 1.18974 0.94408 0.92911 0.94986 1.21378 0.98093 0.93012 1.00663 1.21882 0.93771 0.89494 1.00433 1.60569 1.19849 1.00774 1.50245 1.20917 0.92802 0.85502 1.03159 1.21745 0.93367 0.93829 0.89180 1.23063 1.00256 0.98466 1.00898 1.23848 0.89746 0.91559 0.96961 1.68475 1.26796 1.30141 1.00124 1.25420 0.89467 0.87568 0.98011 1.68241 1.11615 1.14454 1.31400 0.92743 0.99000 0.98586 0.92751 0.93520 0.95500 0.90731 0.84105 0.93300 0.87262 0.81076 0.78129 0.76739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.87 5.41 30.59 0.17 -3.70 16 11 C 0.07 2.42 5.69 86.30 0.49 2.91 16 12 N -0.68 -19.17 6.49 -517.91 -3.36 -22.54 16 13 C 0.11 2.41 6.04 85.56 0.52 2.92 16 14 C 0.16 3.66 6.34 42.58 0.27 3.93 16 15 C -0.20 -3.53 9.84 22.44 0.22 -3.31 16 16 C 0.14 2.30 11.30 84.70 0.96 3.26 16 17 N -0.54 -10.86 10.44 -200.05 -2.09 -12.95 16 18 C 0.28 5.77 12.29 180.88 2.22 8.00 16 19 N -0.54 -12.95 10.38 -188.06 -1.95 -14.90 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 22 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 23 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.34 9.85 8.72 -89.69 -0.78 9.07 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 2.09 8.06 -2.39 -0.02 2.07 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.22 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -67.95 281.90 0.92 -67.04 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.32 Total: 8.82 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 5.69 Total: -15.31 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -7.12 Total: -107.17 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.95 0.92 -67.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236168781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.087 kcal (2) G-P(sol) polarization free energy of solvation -67.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds