Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46895 * 111.00555 * 2 1 4 4 H 1.08999 * 109.47093 * 324.99273 * 3 2 1 5 5 C 1.52991 * 109.47685 * 84.99703 * 3 2 1 6 6 O 1.42900 * 109.47018 * 65.00089 * 5 3 2 7 7 C 1.50711 * 109.47356 * 204.99958 * 3 2 1 8 8 C 1.38655 * 119.87114 * 319.99829 * 7 3 2 9 9 C 1.38612 * 120.49878 * 180.02562 * 8 7 3 10 10 C 1.37641 * 120.24946 * 359.97438 * 9 8 7 11 11 C 1.40700 * 119.74296 * 0.02562 * 10 9 8 12 12 C 1.41393 * 120.24599 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00220 * 24.28884 * 12 11 10 14 14 C 1.39947 * 120.00008 * 204.30237 * 12 11 10 15 15 N 1.30816 * 120.00393 * 17.73299 * 14 12 11 16 16 Si 1.86805 * 119.99798 * 197.73302 * 14 12 11 17 17 H 1.48500 * 109.46785 * 89.99728 * 16 14 12 18 18 H 1.48499 * 109.47153 * 209.99512 * 16 14 12 19 19 H 1.48501 * 109.47280 * 330.00102 * 16 14 12 20 20 C 1.37595 * 119.87351 * 139.72257 * 7 3 2 21 21 H 1.08997 * 109.47662 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46809 * 60.00125 * 1 2 3 23 23 H 1.09000 * 109.46796 * 300.00847 * 1 2 3 24 24 H 1.00907 * 110.99954 * 236.03774 * 2 1 3 25 25 H 1.08998 * 109.47813 * 185.00142 * 5 3 2 26 26 H 1.09006 * 109.47431 * 305.00585 * 5 3 2 27 27 H 0.96708 * 114.00338 * 180.02562 * 6 5 3 28 28 H 1.07998 * 119.75097 * 359.97438 * 8 7 3 29 29 H 1.07999 * 119.87614 * 180.02562 * 9 8 7 30 30 H 1.07992 * 120.13386 * 180.02562 * 10 9 8 31 31 H 0.97000 * 120.00435 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.12891 * 0.02562 * 20 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3399 2.0122 -0.5895 5 6 2.0609 1.8926 1.4369 6 8 3.0090 1.1237 2.1798 7 6 3.3778 1.3788 -0.6005 8 6 4.2646 0.3547 -0.3049 9 6 5.5392 0.3488 -0.8495 10 6 5.9381 1.3618 -1.6917 11 6 5.0466 2.4061 -1.9986 12 6 5.4453 3.4524 -2.8621 13 1 6.2332 3.2876 -3.5822 14 6 4.8194 4.7016 -2.7834 15 7 4.1304 5.0221 -1.7186 16 14 4.9676 5.9113 -4.1991 17 1 3.8544 5.6910 -5.1570 18 1 4.9011 7.2987 -3.6737 19 1 6.2648 5.7059 -4.8920 20 6 3.7529 2.3987 -1.4444 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 0.5140 0.8899 24 1 1.8305 -0.5263 -0.7813 25 1 2.3669 2.9388 1.4304 26 1 1.0784 1.8043 1.9006 27 1 3.1026 1.3991 3.1021 28 1 3.9602 -0.4440 0.3553 29 1 6.2217 -0.4540 -0.6129 30 1 6.9315 1.3552 -2.1153 31 1 3.6962 5.8878 -1.6642 32 1 3.0592 3.1932 -1.6764 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238370523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -32.583151 kcal Electronic energy + Delta-G solvation = -15007.498046 eV Core-core repulsion = 12546.450364 eV Total energy + Delta-G solvation = -2461.047683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.28305 -36.34971 -34.75896 -33.45881 -30.53915 -29.39617 -27.24217 -25.31689 -24.58522 -21.56738 -20.80289 -19.24559 -17.14390 -16.84388 -15.68901 -14.98783 -14.49083 -14.33968 -13.91276 -13.43962 -13.31052 -12.84838 -12.41503 -12.25514 -11.78289 -11.51465 -11.35530 -11.07563 -10.94725 -10.61886 -10.44724 -10.30529 -9.49321 -9.46833 -9.20508 -9.08100 -7.98055 -7.28274 -7.25442 -6.68617 -4.27498 2.84265 3.03562 3.09447 3.12924 3.32142 3.97561 4.62557 4.72937 4.90669 5.49599 5.58378 5.68624 5.74306 5.94632 6.02813 6.07516 6.15012 6.31802 6.45038 6.81119 6.98544 7.14258 7.27578 7.37911 7.52358 7.68046 7.79814 8.06270 8.12814 8.22770 8.30488 8.38254 8.69950 8.97448 9.06334 10.26286 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.008637 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.731722 B = 3241.064080 C = 3597.781066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.679 5.679 3 C 0.135 3.865 4 H 0.052 0.948 5 C 0.099 3.901 6 O -0.545 6.545 7 C -0.081 4.081 8 C -0.188 4.188 9 C -0.108 4.108 10 C -0.221 4.221 11 C 0.104 3.896 12 C -0.468 4.468 13 H 0.075 0.925 14 C 0.077 3.923 15 N -0.800 5.800 16 Si 0.905 3.095 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.156 4.156 21 H 0.061 0.939 22 H 0.017 0.983 23 H 0.058 0.942 24 H 0.346 0.654 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.360 0.640 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.277 0.723 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -2.935 3.025 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.310 5.310 3 C 0.026 3.974 4 H 0.070 0.930 5 C 0.020 3.980 6 O -0.347 6.347 7 C -0.081 4.081 8 C -0.208 4.208 9 C -0.126 4.126 10 C -0.240 4.240 11 C 0.102 3.898 12 C -0.498 4.498 13 H 0.093 0.907 14 C -0.140 4.140 15 N -0.426 5.426 16 Si 0.730 3.270 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.176 4.176 21 H 0.080 0.920 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.164 0.836 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.205 0.795 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.869 -3.110 3.224 7.383 hybrid contribution -0.235 1.355 -0.916 1.652 sum -6.104 -1.755 2.308 6.757 Atomic orbital electron populations 1.22236 0.89257 1.01095 0.99743 1.60432 1.06009 1.14294 1.50302 1.20434 0.94478 0.88712 0.93792 0.93002 1.22050 0.90401 0.93664 0.91867 1.86709 1.62871 1.59901 1.25210 1.19251 0.93538 0.96649 0.98707 1.20227 0.94404 1.00598 1.05556 1.20575 0.95805 0.97659 0.98608 1.21010 0.98580 0.99192 1.05258 1.17518 0.90477 0.91314 0.90486 1.19525 1.17925 0.95028 1.17369 0.90682 1.25849 0.93447 0.99010 0.95669 1.69830 1.25960 1.21553 1.25306 0.86376 0.79817 0.79012 0.81845 1.19452 1.20444 1.18699 1.21182 0.97022 0.98167 1.01198 0.91972 0.96496 0.92351 0.83561 0.93626 0.95190 0.79545 0.88131 0.89630 0.89336 0.91196 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.50 60.06 0.63 1.00 16 2 N -0.68 -11.71 5.99 -115.25 -0.69 -12.40 16 3 C 0.14 2.63 2.64 -68.87 -0.18 2.45 16 4 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 5 C 0.10 1.77 6.79 37.15 0.25 2.02 16 6 O -0.54 -9.93 12.03 -35.23 -0.42 -10.36 16 7 C -0.08 -1.88 4.58 -104.70 -0.48 -2.36 16 8 C -0.19 -4.37 8.01 -39.29 -0.31 -4.68 16 9 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 10 C -0.22 -5.63 9.80 -38.87 -0.38 -6.01 16 11 C 0.10 2.84 5.57 -106.82 -0.60 2.25 16 12 C -0.47 -12.72 9.05 -37.74 -0.34 -13.07 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 14 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 15 N -0.80 -20.92 10.96 55.55 0.61 -20.31 16 16 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 C -0.16 -4.06 8.31 -38.87 -0.32 -4.39 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.02 0.22 8.06 -51.92 -0.42 -0.19 16 23 H 0.06 0.77 7.36 -51.93 -0.38 0.38 16 24 H 0.35 6.04 8.07 -39.29 -0.32 5.72 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.46 7.35 -51.93 -0.38 0.08 16 27 H 0.36 4.76 9.12 45.56 0.42 5.17 16 28 H 0.10 2.26 7.45 -52.49 -0.39 1.87 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 31 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 32 H 0.11 3.08 6.13 -52.49 -0.32 2.76 16 LS Contribution 270.10 15.07 4.07 4.07 Total: -1.00 -29.29 270.10 -7.12 -36.41 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -3.43 Total: 12.47 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -2.22 Total: -23.88 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.08 Total: -32.70 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.42 Total: -10.36 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.29 -7.12 -36.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238370523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.825 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds