Wall clock time and date at job start Mon Mar 30 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46978 * 2 1 4 4 N 1.46496 * 109.46970 * 119.99270 * 2 1 3 5 5 C 1.36934 * 120.00475 * 275.00153 * 4 2 1 6 6 H 1.07997 * 119.99714 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99981 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00433 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99872 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47036 * 90.00208 * 9 7 5 11 11 H 1.48498 * 109.47234 * 209.99755 * 9 7 5 12 12 H 1.48499 * 109.47150 * 330.00345 * 9 7 5 13 13 C 1.52993 * 109.46831 * 239.99595 * 2 1 3 14 14 H 1.09003 * 109.47203 * 184.99872 * 13 2 1 15 15 O 1.42898 * 109.47517 * 304.99950 * 13 2 1 16 16 C 1.50702 * 109.47442 * 65.00365 * 13 2 1 17 17 C 1.38234 * 120.00271 * 99.99361 * 16 13 2 18 18 C 1.38230 * 119.99880 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99485 * 279.97488 * 16 13 2 22 22 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47046 * 300.00450 * 1 2 3 24 24 H 1.08999 * 109.47274 * 59.99954 * 1 2 3 25 25 H 0.97005 * 119.99603 * 95.00177 * 4 2 1 26 26 H 0.96997 * 120.00381 * 180.02562 * 8 7 5 27 27 H 0.96700 * 114.00054 * 59.99589 * 15 13 2 28 28 H 1.08001 * 119.99769 * 359.97438 * 17 16 13 29 29 H 1.08000 * 120.00376 * 180.02562 * 18 17 16 30 30 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 31 31 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 32 32 H 1.07997 * 120.00489 * 0.02562 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0407 2.4240 7 6 2.6123 -0.6615 3.5090 8 7 2.9263 -1.9383 3.4498 9 14 2.7913 0.2707 5.1180 10 1 1.5239 0.1796 5.8865 11 1 3.8962 -0.3224 5.9134 12 1 3.0960 1.6959 4.8330 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7996 -1.2056 15 8 1.4702 -2.0304 -1.3093 16 6 1.6414 0.0569 -2.4766 17 6 2.5588 0.8815 -3.1004 18 6 2.1933 1.5949 -4.2265 19 6 0.9104 1.4833 -4.7293 20 6 -0.0067 0.6579 -4.1061 21 6 0.3583 -0.0542 -2.9789 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.2490 -1.6317 1.1527 26 1 3.2496 -2.3955 4.2418 27 1 0.5041 -2.0374 -1.3502 28 1 3.5612 0.9684 -2.7078 29 1 2.9101 2.2389 -4.7142 30 1 0.6235 2.0440 -5.6066 31 1 -1.0091 0.5709 -4.4986 32 1 -0.3586 -0.6984 -2.4915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238379649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:23 Heat of formation + Delta-G solvation = -38.859403 kcal Electronic energy + Delta-G solvation = -14849.916429 eV Core-core repulsion = 12388.596588 eV Total energy + Delta-G solvation = -2461.319841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80647 -38.42743 -36.10534 -33.75746 -32.24008 -31.79654 -29.94954 -27.47402 -25.64766 -23.38513 -22.61519 -21.28325 -19.34567 -18.62578 -17.05898 -16.62912 -16.46758 -16.22224 -15.46764 -15.23242 -14.90179 -14.39409 -14.27285 -13.72203 -13.43410 -13.15047 -12.93914 -12.76606 -12.54535 -12.39790 -12.15708 -12.01180 -11.81597 -11.64726 -11.01333 -10.84586 -9.76528 -9.62772 -9.00952 -7.93676 -5.23236 0.44410 0.53329 1.46207 1.48219 1.56649 2.54878 2.87714 3.37829 3.56385 3.64160 3.97419 4.05298 4.17754 4.26634 4.32120 4.35775 4.52151 4.66450 4.71900 4.93864 4.98966 5.09709 5.17262 5.19247 5.47729 5.49928 5.60074 5.64541 5.74255 6.14250 6.27407 6.75771 7.33665 8.09732 8.34217 9.29662 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049553 B = 0.006409 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.912861 B = 4367.888764 C = 4487.692742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.045 0.955 4 N -0.733 5.733 5 C -0.242 4.242 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.269 1.269 13 C 0.150 3.850 14 H 0.086 0.914 15 O -0.564 6.564 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.120 4.120 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.375 0.625 26 H 0.251 0.749 27 H 0.379 0.621 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 7.030 -16.668 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.063 0.937 4 N -0.374 5.374 5 C -0.373 4.373 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.214 1.214 11 H -0.222 1.222 12 H -0.194 1.194 13 C 0.090 3.910 14 H 0.104 0.896 15 O -0.372 6.372 16 C -0.119 4.119 17 C -0.147 4.147 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.138 4.138 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.207 0.793 26 H 0.059 0.941 27 H 0.229 0.771 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.145 7.010 -16.524 18.673 hybrid contribution -0.124 0.011 1.278 1.284 sum -5.269 7.022 -15.246 17.593 Atomic orbital electron populations 1.22412 0.97238 1.01334 1.01349 1.20973 0.93869 0.95153 0.86289 0.93720 1.42553 1.78426 1.10482 1.05924 1.19628 1.35187 0.94141 0.88384 0.90795 1.25576 1.02852 0.96890 1.01506 1.69848 1.52469 1.10337 1.29393 0.85142 0.76925 0.78002 0.79701 1.21378 1.22203 1.19415 1.20967 0.97468 0.81862 0.90722 0.89601 1.86582 1.26145 1.27771 1.96699 1.20466 0.95580 0.98837 0.96980 1.21207 0.99541 0.97241 0.96682 1.21414 0.97553 0.99330 0.95811 1.21527 0.93304 0.98785 1.00647 1.21450 1.00858 0.96541 0.95157 1.21140 0.95183 1.00313 0.97150 0.92852 0.94283 0.90472 0.79263 0.94050 0.77065 0.86088 0.83898 0.83368 0.83498 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 8.23 71.98 0.59 -5.09 16 2 C 0.15 5.91 2.75 44.99 0.12 6.03 16 3 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.73 -38.29 5.10 -322.96 -1.65 -39.94 16 5 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 6 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 8 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.97 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 C 0.15 5.30 3.18 29.85 0.09 5.39 16 14 H 0.09 3.34 8.00 -2.39 -0.02 3.32 16 15 O -0.56 -20.28 12.82 -148.98 -1.91 -22.19 16 16 C -0.12 -3.38 4.82 -19.87 -0.10 -3.47 16 17 C -0.13 -3.36 9.67 22.27 0.22 -3.15 16 18 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 19 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 20 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 21 C -0.12 -2.87 7.30 22.27 0.16 -2.71 16 22 H 0.05 1.78 6.72 -2.39 -0.02 1.77 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 2.17 5.57 -2.39 -0.01 2.16 16 25 H 0.38 21.47 7.58 -92.70 -0.70 20.77 16 26 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.38 11.05 5.66 -74.06 -0.42 10.63 16 28 H 0.12 3.08 8.04 -2.91 -0.02 3.06 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.13 2.77 5.87 -2.91 -0.02 2.76 16 Total: -1.00 -68.01 267.35 1.83 -66.18 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.01 Total: 34.20 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.07 Total: -26.45 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -1.37 Total: -100.72 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.91 Total: -22.19 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -68.01 1.83 -66.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238379649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.325 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds