Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 5 5 C 1.36945 * 119.99892 * 84.99908 * 4 2 1 6 6 H 1.08000 * 119.99422 * 359.72792 * 5 4 2 7 7 C 1.38811 * 120.00031 * 179.72716 * 5 4 2 8 8 N 1.31616 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47389 * 59.99917 * 9 7 5 11 11 H 1.48501 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47102 * 299.99569 * 9 7 5 13 13 C 1.53006 * 109.46809 * 119.99419 * 2 1 3 14 14 H 1.08994 * 109.47507 * 300.00383 * 13 2 1 15 15 O 1.42902 * 109.46788 * 60.00542 * 13 2 1 16 16 C 1.50704 * 109.46913 * 180.02562 * 13 2 1 17 17 C 1.38236 * 119.99801 * 279.72985 * 16 13 2 18 18 C 1.38241 * 119.99254 * 179.78941 * 17 16 13 19 19 C 1.38237 * 120.00179 * 0.44297 * 18 17 16 20 20 C 1.38233 * 119.99810 * 359.81031 * 19 18 17 21 21 C 1.38229 * 120.00217 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 23 23 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 24 24 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00738 * 264.73373 * 4 2 1 26 26 H 0.97004 * 119.99151 * 179.97438 * 8 7 5 27 27 H 0.96696 * 114.00337 * 59.99844 * 15 13 2 28 28 H 1.07992 * 120.00430 * 359.97438 * 17 16 13 29 29 H 1.07994 * 119.99416 * 180.27296 * 18 17 16 30 30 H 1.07998 * 119.99607 * 179.83878 * 19 18 17 31 31 H 1.08004 * 119.99728 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.00078 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1493 -0.0075 -2.3757 6 1 1.8881 1.0392 -2.4253 7 6 2.6174 -0.6606 -3.5076 8 7 2.9351 -1.9364 -3.4472 9 14 2.7965 0.2715 -5.1166 10 1 3.7470 1.3976 -4.9332 11 1 3.3112 -0.6455 -6.1651 12 1 1.4732 0.8030 -5.5307 13 6 2.0399 -0.7212 1.2494 14 1 1.6766 -0.2073 2.1393 15 8 1.5636 -2.0685 1.2494 16 6 3.5470 -0.7206 1.2497 17 6 4.2386 -1.6411 0.4846 18 6 5.6210 -1.6377 0.4816 19 6 6.3116 -0.7198 1.2508 20 6 5.6199 0.1971 2.0199 21 6 4.2376 0.1967 2.0194 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.2529 -1.6308 -1.1515 26 1 3.2620 -2.3927 -4.2383 27 1 1.8490 -2.5865 0.4844 28 1 3.6991 -2.3608 -0.1130 29 1 6.1614 -2.3539 -0.1195 30 1 7.3916 -0.7189 1.2504 31 1 6.1595 0.9145 2.6205 32 1 3.6971 0.9128 2.6207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238435930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = -17.810611 kcal Electronic energy + Delta-G solvation = -15232.660178 eV Core-core repulsion = 12772.253081 eV Total energy + Delta-G solvation = -2460.407097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32768 -36.97755 -34.21074 -31.92129 -30.74437 -30.36761 -28.55082 -25.50887 -23.80727 -22.07405 -21.16736 -19.78236 -17.65055 -16.96455 -15.62892 -15.25857 -14.86925 -14.36813 -13.83681 -13.62106 -13.02082 -12.76989 -12.67269 -12.50245 -11.92162 -11.63324 -11.37256 -11.11343 -10.85180 -10.75524 -10.60547 -10.32171 -10.14564 -9.66338 -9.42100 -8.93202 -8.43054 -8.20893 -6.98971 -5.79539 -3.07071 1.79929 1.89184 3.43061 3.47742 3.48162 4.22187 4.57510 4.95346 5.09902 5.26209 5.39173 5.51769 5.53364 5.56350 5.69129 5.93333 6.00714 6.12873 6.23290 6.31482 6.46296 6.48212 6.65173 6.79555 6.86105 6.98073 7.08719 7.12788 7.45781 7.68358 8.04515 8.39470 9.49929 10.03698 10.38148 11.43371 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.010697 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.870983 B = 2616.951528 C = 3255.659895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.054 0.946 4 N -0.719 5.719 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.287 1.287 13 C 0.139 3.861 14 H 0.099 0.901 15 O -0.559 6.559 16 C -0.099 4.099 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.118 4.118 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.379 0.621 26 H 0.255 0.745 27 H 0.377 0.623 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 2.072 9.990 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.072 0.928 4 N -0.362 5.362 5 C -0.365 4.365 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C 0.079 3.921 14 H 0.117 0.883 15 O -0.366 6.366 16 C -0.100 4.100 17 C -0.094 4.094 18 C -0.134 4.134 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.136 4.136 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.214 0.786 26 H 0.065 0.935 27 H 0.226 0.774 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.360 2.373 10.396 10.922 hybrid contribution 0.540 0.157 -1.638 1.732 sum 2.901 2.530 8.759 9.567 Atomic orbital electron populations 1.22309 0.98318 1.01485 0.99754 1.20896 0.92651 0.96086 0.86958 0.92771 1.42326 1.78142 1.10427 1.05336 1.19146 1.36269 0.93924 0.87191 0.91308 1.24672 1.02090 0.96001 0.97929 1.69609 1.50886 1.08682 1.29064 0.86292 0.77737 0.78643 0.83659 1.21367 1.21735 1.21355 1.21221 0.88138 0.83691 0.99042 0.88282 1.86467 1.76914 1.23371 1.49813 1.20482 0.96589 0.96179 0.96715 1.20930 0.94133 0.98283 0.96045 1.21088 0.94522 0.99100 0.98703 1.21036 0.99285 0.96426 0.97932 1.20951 0.94221 0.99298 1.00322 1.20861 0.94245 0.98826 0.99694 0.94532 0.92861 0.92745 0.78627 0.93493 0.77410 0.85802 0.86404 0.86847 0.86795 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.35 37.16 0.35 -2.59 16 2 C 0.14 2.86 2.72 -67.93 -0.18 2.68 16 3 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 4 N -0.72 -17.16 4.23 -53.42 -0.23 -17.39 16 5 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 9 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.14 2.42 3.08 -27.88 -0.09 2.34 16 14 H 0.10 1.53 8.00 -51.93 -0.42 1.11 16 15 O -0.56 -10.04 12.51 -35.23 -0.44 -10.48 16 16 C -0.10 -1.76 4.88 -104.62 -0.51 -2.28 16 17 C -0.08 -1.42 8.32 -39.58 -0.33 -1.75 16 18 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 19 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 20 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 21 C -0.12 -1.87 9.67 -39.59 -0.38 -2.25 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 1.04 7.68 -51.93 -0.40 0.64 16 25 H 0.38 9.27 4.65 -40.82 -0.19 9.08 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 27 H 0.38 6.66 6.12 45.56 0.28 6.94 16 28 H 0.12 2.44 5.50 -52.49 -0.29 2.15 16 29 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.54 8.04 -52.49 -0.42 1.11 16 LS Contribution 268.94 15.07 4.05 4.05 Total: -1.00 -29.57 268.94 -7.01 -36.59 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -3.52 Total: 14.22 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.58 Total: -17.86 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.50 Total: -43.78 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.44 Total: -10.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.57 -7.01 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238435930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.776 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds