Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 5 5 C 1.36945 * 119.99892 * 84.99908 * 4 2 1 6 6 H 1.08000 * 119.99422 * 359.72792 * 5 4 2 7 7 C 1.38811 * 120.00031 * 179.72716 * 5 4 2 8 8 N 1.31616 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47389 * 59.99917 * 9 7 5 11 11 H 1.48501 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47102 * 299.99569 * 9 7 5 13 13 C 1.53006 * 109.46809 * 119.99419 * 2 1 3 14 14 H 1.08994 * 109.47507 * 300.00383 * 13 2 1 15 15 O 1.42902 * 109.46788 * 60.00542 * 13 2 1 16 16 C 1.50704 * 109.46913 * 180.02562 * 13 2 1 17 17 C 1.38236 * 119.99801 * 279.72985 * 16 13 2 18 18 C 1.38241 * 119.99254 * 179.78941 * 17 16 13 19 19 C 1.38237 * 120.00179 * 0.44297 * 18 17 16 20 20 C 1.38233 * 119.99810 * 359.81031 * 19 18 17 21 21 C 1.38229 * 120.00217 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 23 23 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 24 24 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00738 * 264.73373 * 4 2 1 26 26 H 0.97004 * 119.99151 * 179.97438 * 8 7 5 27 27 H 0.96696 * 114.00337 * 59.99844 * 15 13 2 28 28 H 1.07992 * 120.00430 * 359.97438 * 17 16 13 29 29 H 1.07994 * 119.99416 * 180.27296 * 18 17 16 30 30 H 1.07998 * 119.99607 * 179.83878 * 19 18 17 31 31 H 1.08004 * 119.99728 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.00078 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1493 -0.0075 -2.3757 6 1 1.8881 1.0392 -2.4253 7 6 2.6174 -0.6606 -3.5076 8 7 2.9351 -1.9364 -3.4472 9 14 2.7965 0.2715 -5.1166 10 1 3.7470 1.3976 -4.9332 11 1 3.3112 -0.6455 -6.1651 12 1 1.4732 0.8030 -5.5307 13 6 2.0399 -0.7212 1.2494 14 1 1.6766 -0.2073 2.1393 15 8 1.5636 -2.0685 1.2494 16 6 3.5470 -0.7206 1.2497 17 6 4.2386 -1.6411 0.4846 18 6 5.6210 -1.6377 0.4816 19 6 6.3116 -0.7198 1.2508 20 6 5.6199 0.1971 2.0199 21 6 4.2376 0.1967 2.0194 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.2529 -1.6308 -1.1515 26 1 3.2620 -2.3927 -4.2383 27 1 1.8490 -2.5865 0.4844 28 1 3.6991 -2.3608 -0.1130 29 1 6.1614 -2.3539 -0.1195 30 1 7.3916 -0.7189 1.2504 31 1 6.1595 0.9145 2.6205 32 1 3.6971 0.9128 2.6207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238435930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = -36.740587 kcal Electronic energy + Delta-G solvation = -15233.481043 eV Core-core repulsion = 12772.253081 eV Total energy + Delta-G solvation = -2461.227963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66969 -38.38044 -35.96481 -33.72905 -32.14228 -31.62607 -30.35056 -26.91026 -25.77843 -23.34784 -22.54465 -21.30897 -19.52106 -18.39560 -17.18306 -16.64756 -16.35157 -16.15794 -15.38290 -15.01262 -14.57538 -14.34039 -14.09869 -13.97252 -13.42105 -13.13676 -12.95997 -12.76972 -12.61675 -12.43586 -12.20249 -11.92164 -11.72793 -11.55935 -11.01249 -10.79118 -9.70748 -9.50526 -8.96697 -7.91601 -5.17575 0.53111 0.62496 1.46744 1.48151 1.53819 2.56603 2.94095 3.41657 3.55128 3.76406 3.96371 4.06415 4.17145 4.25475 4.35272 4.57725 4.64812 4.69202 4.82243 4.90072 5.07043 5.16690 5.23964 5.27270 5.53029 5.55792 5.63666 5.71107 5.80584 6.21774 6.29762 6.60934 7.37590 8.10573 8.34648 9.31101 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.010697 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.870983 B = 2616.951528 C = 3255.659895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.051 0.949 4 N -0.726 5.726 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.963 3.037 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.281 1.281 13 C 0.146 3.854 14 H 0.128 0.872 15 O -0.563 6.563 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.122 4.122 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.373 0.627 26 H 0.249 0.751 27 H 0.375 0.625 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 3.775 11.414 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 H 0.069 0.931 4 N -0.368 5.368 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.793 3.207 10 H -0.209 1.209 11 H -0.223 1.223 12 H -0.208 1.208 13 C 0.087 3.913 14 H 0.145 0.855 15 O -0.370 6.370 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.140 4.140 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.207 0.793 26 H 0.058 0.942 27 H 0.224 0.776 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.745 4.103 11.853 12.840 hybrid contribution 0.428 -0.334 -1.986 2.059 sum 3.174 3.770 9.866 11.029 Atomic orbital electron populations 1.22187 0.97100 1.01097 1.00632 1.21100 0.93368 0.95796 0.86645 0.93080 1.42437 1.78263 1.10288 1.05857 1.19460 1.34661 0.94059 0.88348 0.91246 1.25359 1.03083 0.96856 1.00819 1.69757 1.52413 1.09898 1.29260 0.85367 0.77710 0.77402 0.80201 1.20912 1.22336 1.20790 1.21244 0.88293 0.83171 0.98628 0.85451 1.86447 1.77030 1.23783 1.49707 1.20595 0.96731 0.96912 0.97591 1.20900 0.94957 0.98995 0.97096 1.21289 0.94253 1.00269 0.99773 1.21407 1.00845 0.95532 0.96915 1.21413 0.94111 0.99243 0.99751 1.21255 0.95055 0.98484 0.99193 0.91110 0.94479 0.93726 0.79295 0.94219 0.77631 0.88177 0.86259 0.84020 0.83197 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.35 71.98 0.67 -4.69 16 2 C 0.14 5.41 2.72 44.99 0.12 5.53 16 3 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 4 N -0.73 -34.98 4.23 -322.94 -1.37 -36.35 16 5 C -0.23 -12.71 9.93 84.03 0.83 -11.87 16 6 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 8 N -0.96 -57.19 13.06 21.65 0.28 -56.91 16 9 Si 0.96 46.14 29.55 68.60 2.03 48.17 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 C 0.15 4.88 3.08 29.85 0.09 4.98 16 14 H 0.13 3.52 8.00 -2.39 -0.02 3.50 16 15 O -0.56 -20.05 12.51 -148.98 -1.86 -21.92 16 16 C -0.12 -4.06 4.88 -19.86 -0.10 -4.16 16 17 C -0.10 -3.85 8.32 22.27 0.19 -3.66 16 18 C -0.14 -4.74 10.05 22.27 0.22 -4.52 16 19 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 20 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 21 C -0.12 -3.51 9.67 22.27 0.22 -3.29 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.04 1.66 7.68 -2.39 -0.02 1.64 16 25 H 0.37 18.82 4.65 -92.71 -0.43 18.38 16 26 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.37 13.72 6.12 -74.06 -0.45 13.27 16 28 H 0.10 4.19 5.50 -2.91 -0.02 4.17 16 29 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.14 3.23 8.04 -2.91 -0.02 3.20 16 Total: -1.00 -62.91 268.94 2.48 -60.43 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: 0.24 Total: 38.26 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.16 Total: -31.68 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -1.08 Total: -93.26 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.86 Total: -21.92 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -62.91 2.48 -60.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238435930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.687 kcal (2) G-P(sol) polarization free energy of solvation -62.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds