Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38316 * 119.99937 * 2 1 4 4 C 1.38209 * 120.19269 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.90176 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47163 * 20.01764 * 5 4 3 7 7 N 1.46905 * 109.47165 * 140.02435 * 5 4 3 8 8 C 1.50703 * 109.46929 * 260.01876 * 5 4 3 9 9 H 1.08006 * 119.99967 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00259 * 179.97438 * 8 5 4 11 11 N 1.31510 * 119.99768 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00242 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.46808 * 60.00203 * 12 10 8 14 14 H 1.48499 * 109.47142 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47223 * 300.00137 * 12 10 8 16 16 C 1.38315 * 120.19220 * 359.97438 * 4 3 2 17 17 C 1.38614 * 119.99902 * 0.28080 * 16 4 3 18 18 N 1.40017 * 120.09853 * 179.72070 * 17 16 4 19 19 C 1.38612 * 120.00029 * 180.02562 * 2 1 3 20 20 N 1.40018 * 120.09965 * 359.97438 * 19 2 1 21 21 H 1.09004 * 109.47247 * 89.99555 * 1 2 3 22 22 H 1.08997 * 109.46742 * 209.99494 * 1 2 3 23 23 H 1.09005 * 109.46896 * 329.99538 * 1 2 3 24 24 H 1.07998 * 119.90238 * 0.02936 * 3 2 1 25 25 H 1.00901 * 111.00006 * 59.99378 * 7 5 4 26 26 H 1.00898 * 110.99517 * 183.95166 * 7 5 4 27 27 H 0.97001 * 120.00229 * 179.97438 * 11 10 8 28 28 H 1.08002 * 119.99684 * 179.97438 * 16 4 3 29 29 H 0.96998 * 119.99850 * 359.97438 * 18 17 16 30 30 H 0.96994 * 120.00471 * 179.97438 * 18 17 16 31 31 H 0.97005 * 119.99869 * 0.02562 * 20 19 2 32 32 H 0.96998 * 120.00045 * 179.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1979 0.0000 4 6 3.5807 1.2025 -0.0005 5 6 4.3275 2.5114 -0.0011 6 1 3.6691 3.3056 0.3507 7 7 5.4924 2.4109 0.8883 8 6 4.7898 2.8253 -1.4007 9 1 4.5649 2.1452 -2.2090 10 6 5.4990 3.9812 -1.6496 11 7 5.7724 4.8096 -0.6654 12 14 6.0714 4.3707 -3.3845 13 1 4.8936 4.4719 -4.2833 14 1 6.8075 5.6604 -3.3851 15 1 6.9686 3.2891 -3.8643 16 6 4.2803 0.0094 -0.0005 17 6 3.5953 -1.1957 -0.0059 18 7 4.3015 -2.4047 -0.0118 19 6 2.2001 -1.2004 -0.0005 20 7 1.5021 -2.4142 -0.0005 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6570 2.1322 0.0005 25 1 6.1186 1.6810 0.5830 26 1 5.9734 3.2954 0.9554 27 1 6.2717 5.6227 -0.8404 28 1 5.3603 0.0167 -0.0014 29 1 5.2714 -2.3999 -0.0125 30 1 3.8208 -3.2472 -0.0152 31 1 0.5321 -2.4159 -0.0005 32 1 1.9886 -3.2534 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238509371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = 18.308384 kcal Electronic energy + Delta-G solvation = -14872.857683 eV Core-core repulsion = 12446.309574 eV Total energy + Delta-G solvation = -2426.548109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16023 -35.47671 -34.15702 -33.11834 -31.16514 -29.78824 -27.48211 -26.02197 -25.52467 -22.31486 -20.96744 -19.23643 -17.28532 -16.47774 -16.28625 -15.66848 -14.94405 -14.48288 -13.91582 -13.57416 -13.50931 -12.73757 -12.54003 -12.20014 -12.09075 -11.94537 -11.27845 -11.14928 -10.84935 -10.58438 -10.29194 -10.12869 -10.01310 -9.45040 -9.30610 -8.53097 -7.25386 -7.08452 -6.31717 -5.94540 -4.14573 2.30793 2.57521 3.29275 3.33893 3.37735 4.15681 4.38893 4.53881 4.78198 5.22871 5.47087 5.57897 5.96032 6.00069 6.05075 6.23866 6.38529 6.59911 6.68743 6.79637 7.02281 7.22585 7.41166 7.68798 7.75933 7.84544 8.00445 8.12135 8.26363 8.28022 8.30841 8.80196 9.06415 9.24280 9.56726 10.98396 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034221 B = 0.007803 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.013238 B = 3587.286348 C = 3758.088322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.127 4.127 3 C -0.133 4.133 4 C -0.025 4.025 5 C 0.243 3.757 6 H 0.044 0.956 7 N -0.849 5.849 8 C -0.537 4.537 9 H 0.055 0.945 10 C 0.064 3.936 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.143 4.143 17 C 0.141 3.859 18 N -0.890 5.890 19 C 0.118 3.882 20 N -0.892 5.892 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.112 0.888 25 H 0.309 0.691 26 H 0.353 0.647 27 H 0.264 0.736 28 H 0.115 0.885 29 H 0.394 0.606 30 H 0.382 0.618 31 H 0.390 0.610 32 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -11.861 1.147 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C -0.154 4.154 4 C -0.028 4.028 5 C 0.133 3.867 6 H 0.062 0.938 7 N -0.378 5.378 8 C -0.577 4.577 9 H 0.073 0.927 10 C -0.138 4.138 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.166 4.166 17 C 0.038 3.962 18 N -0.434 5.434 19 C 0.015 3.985 20 N -0.438 5.438 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.168 0.832 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.221 0.779 30 H 0.209 0.791 31 H 0.219 0.781 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.326 -11.669 1.775 13.391 hybrid contribution 0.959 -0.126 -1.957 2.183 sum -5.366 -11.795 -0.183 12.959 Atomic orbital electron populations 1.20514 0.92436 1.01423 1.01122 1.19016 0.94661 0.91572 1.07945 1.20480 0.93865 0.96013 1.05009 1.19977 0.92851 0.95760 0.94206 1.17927 0.89626 0.88496 0.90603 0.93811 1.59538 1.12724 1.11633 1.53934 1.21859 1.34838 1.05997 0.95029 0.92707 1.25022 0.95884 0.95704 0.97162 1.69742 1.40401 1.12217 1.31222 0.86613 0.78831 0.77413 0.84873 1.20211 1.21285 1.20362 1.20172 0.99080 0.89941 1.07410 1.17294 0.89027 0.86931 1.02951 1.42090 1.08106 1.04407 1.88799 1.16886 0.88999 0.86258 1.06315 1.42092 1.07920 1.04396 1.89408 0.92308 0.93044 0.91891 0.87036 0.88139 0.83169 0.92568 0.86756 0.77865 0.79071 0.78093 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.57 36.01 0.34 -1.01 16 2 C -0.13 -2.27 5.89 -104.45 -0.62 -2.88 16 3 C -0.13 -2.77 9.31 -39.56 -0.37 -3.14 16 4 C -0.03 -0.58 4.90 -104.61 -0.51 -1.09 16 5 C 0.24 6.28 2.95 -70.01 -0.21 6.08 16 6 H 0.04 1.24 8.00 -51.93 -0.42 0.82 16 7 N -0.85 -20.93 9.02 -6.65 -0.06 -20.99 16 8 C -0.54 -14.85 8.70 -34.44 -0.30 -15.15 16 9 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 10 C 0.06 1.76 5.38 -17.82 -0.10 1.67 16 11 N -0.90 -25.21 11.54 55.43 0.64 -24.57 16 12 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C -0.14 -2.95 9.13 -39.41 -0.36 -3.31 16 17 C 0.14 2.51 6.78 -83.50 -0.57 1.95 16 18 N -0.89 -12.01 9.09 32.54 0.30 -11.71 16 19 C 0.12 2.00 6.76 -83.50 -0.56 1.43 16 20 N -0.89 -11.18 8.99 32.54 0.29 -10.89 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 23 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 24 H 0.11 2.27 8.03 -52.49 -0.42 1.85 16 25 H 0.31 7.24 7.33 -39.29 -0.29 6.96 16 26 H 0.35 9.25 7.08 -39.29 -0.28 8.97 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.11 2.34 6.66 -52.49 -0.35 1.99 16 29 H 0.39 4.83 8.85 -40.82 -0.36 4.47 16 30 H 0.38 4.16 7.01 -40.82 -0.29 3.87 16 31 H 0.39 4.22 6.83 -40.82 -0.28 3.94 16 32 H 0.38 3.98 7.01 -40.82 -0.29 3.70 16 LS Contribution 264.45 15.07 3.99 3.99 Total: -1.00 -29.76 264.45 -6.80 -36.56 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -3.69 Total: 26.68 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -3.24 Total: -15.46 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: 1.17 Total: -68.16 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.76 -6.80 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238509371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.870 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds