Wall clock time and date at job start Mon Mar 30 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46888 * 236.26232 * 3 2 1 5 5 H 1.09002 * 110.06649 * 58.87131 * 4 3 2 6 6 C 1.53975 * 110.08414 * 180.39715 * 4 3 2 7 7 C 1.54066 * 104.97704 * 120.28294 * 6 4 3 8 8 N 1.47853 * 105.00028 * 18.09356 * 7 6 4 9 9 C 1.47518 * 110.11164 * 213.35186 * 8 7 6 10 10 H 1.09001 * 110.09166 * 214.02136 * 9 8 7 11 11 C 1.50697 * 110.08660 * 335.53859 * 9 8 7 12 12 H 1.08003 * 120.00570 * 0.02562 * 11 9 8 13 13 C 1.37881 * 120.00131 * 179.97438 * 11 9 8 14 14 N 1.31512 * 120.00019 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00303 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47194 * 90.00005 * 15 13 11 17 17 H 1.48500 * 109.47565 * 210.00353 * 15 13 11 18 18 H 1.48501 * 109.47211 * 330.00632 * 15 13 11 19 19 C 1.53965 * 106.31017 * 94.75155 * 9 8 7 20 20 C 1.54067 * 104.97889 * 1.06703 * 19 9 8 21 21 N 1.46594 * 106.11854 * 329.01662 * 8 7 6 22 22 H 1.08993 * 109.46973 * 116.26460 * 3 2 1 23 23 H 1.08996 * 109.47311 * 356.26303 * 3 2 1 24 24 H 1.08998 * 110.33547 * 239.15680 * 6 4 3 25 25 H 1.08994 * 110.33737 * 1.29974 * 6 4 3 26 26 H 1.08999 * 110.33357 * 136.97648 * 7 6 4 27 27 H 1.08998 * 110.33687 * 259.20999 * 7 6 4 28 28 H 0.97002 * 120.00602 * 179.97438 * 14 13 11 29 29 H 1.09001 * 110.34133 * 119.94254 * 19 9 8 30 30 H 1.09006 * 110.34006 * 242.19667 * 19 9 8 31 31 H 1.09003 * 110.33326 * 136.97557 * 20 19 9 32 32 H 1.08999 * 110.33887 * 259.11034 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8021 1.1996 5 1 2.7434 0.3669 2.1263 6 6 4.6572 0.8203 1.2078 7 6 5.0382 2.3107 1.1237 8 7 3.8149 3.0413 1.5183 9 6 3.7231 4.3140 0.7781 10 1 3.2632 5.0789 1.4039 11 6 5.0952 4.7591 0.3418 12 1 5.9603 4.1603 0.5859 13 6 5.2462 5.9304 -0.3698 14 7 4.1929 6.6595 -0.6674 15 14 6.9471 6.4825 -0.9099 16 1 7.2473 5.9204 -2.2511 17 1 6.9890 7.9656 -0.9740 18 1 7.9572 6.0005 0.0662 19 6 2.8412 4.0357 -0.4529 20 6 2.4376 2.5542 -0.3268 21 7 2.6873 2.2087 1.0890 22 1 2.9711 0.4556 -0.9215 23 1 2.9718 -1.0246 0.0670 24 1 5.0363 0.3839 2.1319 25 1 5.0471 0.2787 0.3460 26 1 5.8517 2.5333 1.8142 27 1 5.3233 2.5719 0.1046 28 1 4.2991 7.4837 -1.1677 29 1 1.9564 4.6721 -0.4369 30 1 3.4085 4.1970 -1.3697 31 1 1.3820 2.4274 -0.5672 32 1 3.0516 1.9371 -0.9829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250859084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:09 Heat of formation + Delta-G solvation = 83.686621 kcal Electronic energy + Delta-G solvation = -15542.771758 eV Core-core repulsion = 13119.058662 eV Total energy + Delta-G solvation = -2423.713096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01373 -36.51986 -34.43868 -32.24650 -32.03151 -28.95779 -27.59797 -25.40529 -24.30084 -20.62141 -20.02865 -19.76140 -17.51894 -16.25513 -16.01147 -15.14476 -14.63774 -14.17532 -13.60430 -13.56408 -13.25352 -13.11808 -12.69854 -12.55075 -11.85900 -11.57136 -11.29432 -11.13855 -10.94391 -10.87244 -10.69133 -10.54888 -10.48365 -9.98719 -9.81844 -8.99429 -8.59321 -8.32955 -7.62333 -6.16214 -4.22321 2.91108 2.94308 3.20876 3.29331 3.31291 4.03582 4.26747 4.44726 4.73027 5.03577 5.15622 5.17186 5.28090 5.39305 5.41422 5.68436 5.78038 5.85522 6.08457 6.22325 6.24743 6.53266 6.64373 6.75470 6.90265 7.16774 7.37015 7.56283 7.67939 7.73261 7.86112 8.06918 8.39272 8.81800 9.43239 10.92039 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044183 B = 0.008723 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.569250 B = 3209.129730 C = 3538.537440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.217 3.783 3 C -0.043 4.043 4 C 0.057 3.943 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.004 3.996 8 N -0.328 5.328 9 C 0.186 3.814 10 H 0.057 0.943 11 C -0.536 4.536 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.883 5.883 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.111 4.111 20 C -0.020 4.020 21 N -0.336 5.336 22 H 0.117 0.883 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -11.123 -0.267 11.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.101 4.101 3 C -0.084 4.084 4 C -0.055 4.055 5 H 0.115 0.885 6 C -0.185 4.185 7 C -0.125 4.125 8 N -0.140 5.140 9 C 0.078 3.922 10 H 0.075 0.925 11 C -0.575 4.575 12 H 0.089 0.911 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.151 4.151 20 C -0.149 4.149 21 N -0.148 5.148 22 H 0.135 0.865 23 H 0.130 0.870 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.021 -10.735 0.606 10.753 hybrid contribution 2.069 0.194 -1.859 2.788 sum 2.048 -10.541 -1.253 10.811 Atomic orbital electron populations 1.81170 1.12935 1.09138 1.08498 1.28891 0.95069 0.92791 0.93303 1.19926 0.82566 1.03472 1.02442 1.22792 0.94645 0.91012 0.97028 0.88519 1.22950 0.94454 0.98737 1.02366 1.23615 0.96447 0.90220 1.02268 1.70258 0.95541 1.01553 1.46669 1.20344 0.95768 0.86759 0.89334 0.92537 1.21472 0.92454 1.07722 1.35822 0.91081 1.24963 0.96827 0.96170 0.95730 1.69980 1.28879 1.14420 1.38683 0.86555 0.84336 0.77998 0.78920 1.20701 1.21092 1.19737 1.22668 0.99669 0.90813 1.01947 1.23941 1.00360 0.99438 0.91169 1.70449 1.27469 1.00422 1.16443 0.86521 0.87004 0.90712 0.91185 0.89987 0.90975 0.92713 0.92823 0.91054 0.91182 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.46 18.54 42.15 0.78 -6.68 16 2 C 0.22 3.08 13.45 -20.76 -0.28 2.80 16 3 C -0.04 -0.48 4.50 -29.51 -0.13 -0.61 16 4 C 0.06 0.79 3.33 -66.87 -0.22 0.57 16 5 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 6 C -0.15 -1.90 6.65 -25.67 -0.17 -2.08 16 7 C 0.00 0.07 4.77 -2.74 -0.01 0.06 16 8 N -0.33 -6.95 6.34 -105.65 -0.67 -7.62 16 9 C 0.19 4.55 3.27 -68.02 -0.22 4.33 16 10 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 11 C -0.54 -13.66 7.16 -34.44 -0.25 -13.91 16 12 H 0.07 1.75 5.46 -52.48 -0.29 1.46 16 13 C 0.07 1.75 5.12 -17.82 -0.09 1.66 16 14 N -0.88 -24.28 12.50 55.43 0.69 -23.59 16 15 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.11 -2.52 5.78 -25.67 -0.15 -2.67 16 20 C -0.02 -0.37 4.80 -2.74 -0.01 -0.39 16 21 N -0.34 -6.31 6.17 -104.43 -0.64 -6.95 16 22 H 0.12 1.25 5.56 -51.93 -0.29 0.96 16 23 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 26 H 0.08 1.48 7.88 -51.93 -0.41 1.07 16 27 H 0.07 1.42 6.25 -51.93 -0.32 1.09 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.73 7.37 -51.93 -0.38 1.35 16 31 H 0.07 1.31 7.16 -51.93 -0.37 0.93 16 32 H 0.05 0.78 5.39 -51.93 -0.28 0.50 16 LS Contribution 255.02 15.07 3.84 3.84 Total: -1.00 -29.14 255.02 -6.55 -35.69 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.99 Total: 0.37 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.54 Total: -10.23 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.16 Total: -44.83 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.14 -6.55 -35.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250859084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.375 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds