Wall clock time and date at job start Mon Mar 30 2020 03:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31025 * 1 3 3 Si 1.86806 * 120.00296 * 2 1 4 4 H 1.48493 * 109.47426 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00275 * 3 2 1 6 6 H 1.48504 * 109.46836 * 59.99889 * 3 2 1 7 7 C 1.39692 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00660 * 179.97438 * 7 2 1 9 9 C 1.41600 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.41884 * 126.55991 * 359.95352 * 9 7 2 11 11 N 1.30320 * 108.04516 * 179.75667 * 10 9 7 12 12 N 1.39878 * 109.23234 * 0.44209 * 11 10 9 13 13 C 1.46499 * 125.67414 * 179.80760 * 12 11 10 14 14 H 1.09001 * 109.53521 * 334.79253 * 13 12 11 15 15 C 1.53118 * 109.50189 * 94.89355 * 13 12 11 16 16 C 1.53121 * 109.15998 * 177.59752 * 15 13 12 17 17 C 1.53044 * 109.27467 * 302.34543 * 16 15 13 18 18 N 1.46847 * 109.52516 * 59.18169 * 17 16 15 19 19 C 1.46848 * 111.19556 * 298.25761 * 18 17 16 20 20 C 1.34501 * 108.64760 * 359.55053 * 12 11 10 21 21 H 0.96998 * 119.99513 * 359.97438 * 1 2 3 22 22 H 1.08000 * 125.97077 * 0.07570 * 10 9 7 23 23 H 1.09004 * 109.52160 * 297.49425 * 15 13 12 24 24 H 1.08992 * 109.52149 * 57.62840 * 15 13 12 25 25 H 1.08996 * 109.50720 * 62.28327 * 16 15 13 26 26 H 1.08999 * 109.50475 * 182.36454 * 16 15 13 27 27 H 1.08999 * 109.45943 * 299.16193 * 17 16 15 28 28 H 1.09003 * 109.46209 * 179.19733 * 17 16 15 29 29 H 1.00901 * 110.99839 * 174.16251 * 18 17 16 30 30 H 1.09000 * 109.46085 * 181.75720 * 19 18 17 31 31 H 1.08999 * 109.45956 * 301.72471 * 19 18 17 32 32 H 1.08003 * 126.40551 * 180.30021 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 3.7043 1.3464 0.0006 5 1 1.8856 2.3965 -1.2125 6 1 1.8856 2.3964 1.2125 7 6 2.0087 -1.2098 0.0005 8 1 3.0888 -1.2099 0.0001 9 6 1.3007 -2.4360 0.0005 10 6 -0.1089 -2.5981 0.0010 11 7 -0.3684 -3.8752 -0.0045 12 7 0.8341 -4.5897 0.0016 13 6 0.9606 -6.0492 0.0023 14 1 0.0639 -6.4926 0.4353 15 6 1.1346 -6.5479 -1.4349 16 6 1.3261 -8.0670 -1.4201 17 6 2.5371 -8.4151 -0.5514 18 7 2.3215 -7.9176 0.8133 19 6 2.1821 -6.4558 0.8297 20 6 1.8548 -3.7139 0.0010 21 1 -0.4849 0.8401 0.0004 22 1 -0.8389 -1.8022 0.0002 23 1 0.2475 -6.2984 -2.0170 24 1 2.0087 -6.0740 -1.8815 25 1 0.4352 -8.5422 -1.0095 26 1 1.4925 -8.4228 -2.4368 27 1 3.4300 -7.9510 -0.9704 28 1 2.6678 -9.4970 -0.5272 29 1 3.0630 -8.2170 1.4286 30 1 2.0548 -6.1147 1.8570 31 1 3.0766 -6.0009 0.4043 32 1 2.9073 -3.9562 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257813639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:19 Heat of formation + Delta-G solvation = 66.863946 kcal Electronic energy + Delta-G solvation = -14899.622528 eV Core-core repulsion = 12475.179947 eV Total energy + Delta-G solvation = -2424.442582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57986 -37.90152 -33.59859 -32.31117 -31.46103 -28.93881 -27.92931 -24.88045 -23.67568 -22.54629 -20.21503 -19.42077 -18.49927 -17.36176 -16.35371 -14.93141 -14.62484 -14.48524 -13.94975 -13.92813 -13.72970 -12.92850 -12.60214 -12.35077 -12.22183 -11.31534 -11.20353 -11.15303 -10.97257 -10.73326 -10.55272 -10.35221 -10.31976 -9.95588 -9.19901 -8.76779 -8.50729 -7.75615 -7.10839 -6.39003 -3.95393 3.06395 3.22417 3.27294 3.47515 3.69395 4.16646 4.40287 4.46318 4.90924 5.00472 5.07197 5.24422 5.40812 5.58137 5.64606 5.75171 5.77526 5.89362 6.01717 6.08214 6.32500 6.44587 6.50249 6.88279 6.99411 7.29730 7.37394 7.57461 7.73005 8.20182 8.60817 8.71089 9.11281 9.21543 9.57187 10.60771 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058173 B = 0.006393 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.209731 B = 4378.988000 C = 4581.902033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.437 4.437 8 H 0.067 0.933 9 C -0.021 4.021 10 C 0.030 3.970 11 N -0.339 5.339 12 N -0.389 5.389 13 C 0.184 3.816 14 H 0.090 0.910 15 C -0.132 4.132 16 C -0.114 4.114 17 C 0.055 3.945 18 N -0.687 5.687 19 C 0.054 3.946 20 C -0.123 4.123 21 H 0.272 0.728 22 H 0.202 0.798 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.345 0.655 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -11.196 -0.793 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.472 4.472 8 H 0.085 0.915 9 C -0.031 4.031 10 C -0.157 4.157 11 N -0.160 5.160 12 N -0.177 5.177 13 C 0.079 3.921 14 H 0.108 0.892 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.074 4.074 18 N -0.319 5.319 19 C -0.076 4.076 20 C -0.263 4.263 21 H 0.083 0.917 22 H 0.218 0.782 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.663 -12.104 -0.809 12.420 hybrid contribution 2.128 1.732 -0.188 2.750 sum 4.791 -10.372 -0.996 11.469 Atomic orbital electron populations 1.69466 1.07086 1.27713 1.43291 1.25628 0.94769 1.00529 0.93489 0.86181 0.80247 0.81547 0.78051 1.19113 1.20408 1.20392 1.18756 0.93547 0.89132 1.45765 0.91467 1.18224 0.91845 0.91611 1.01394 1.25091 0.98021 0.91869 1.00728 1.76573 1.05749 1.07010 1.26704 1.47440 1.04088 1.03231 1.62966 1.20551 0.98594 0.78041 0.94887 0.89179 1.22055 1.02697 0.95050 0.97292 1.21562 0.98633 0.95916 0.99125 1.21971 0.96948 0.99582 0.88930 1.60174 1.51099 1.11017 1.09622 1.22165 0.97244 0.87227 1.01000 1.22066 0.92183 0.89938 1.22091 0.91695 0.78160 0.91216 0.91886 0.91009 0.91402 0.95147 0.90795 0.83731 0.90068 0.94240 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.77 10.33 55.54 0.57 -22.20 16 2 C 0.07 1.74 5.49 -17.35 -0.10 1.65 16 3 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.44 -12.17 9.40 -37.76 -0.35 -12.53 16 8 H 0.07 1.80 7.84 -52.49 -0.41 1.39 16 9 C -0.02 -0.58 5.93 -106.83 -0.63 -1.22 16 10 C 0.03 0.84 10.91 -16.80 -0.18 0.65 16 11 N -0.34 -8.86 12.47 30.97 0.39 -8.48 16 12 N -0.39 -9.02 3.50 -53.84 -0.19 -9.21 16 13 C 0.18 3.34 3.34 -67.85 -0.23 3.12 16 14 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 15 C -0.13 -2.10 5.61 -26.61 -0.15 -2.25 16 16 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 17 C 0.05 0.61 6.55 -3.83 -0.03 0.59 16 18 N -0.69 -8.49 6.85 -113.81 -0.78 -9.27 16 19 C 0.05 0.83 5.48 -3.83 -0.02 0.81 16 20 C -0.12 -3.03 10.64 -15.99 -0.17 -3.20 16 21 H 0.27 6.75 8.30 -40.82 -0.34 6.41 16 22 H 0.20 5.67 5.77 -52.49 -0.30 5.37 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.34 3.47 8.90 -39.29 -0.35 3.12 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.62 7.08 -51.93 -0.37 0.25 16 32 H 0.14 3.01 7.21 -52.48 -0.38 2.63 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -29.70 263.72 -7.41 -37.10 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.33 Total: 7.09 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.02 Total: -13.92 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.01 Total: -49.16 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.70 -7.41 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257813639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.968 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds