Wall clock time and date at job start Mon Mar 30 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48499 * 109.47297 * 271.44536 * 3 2 1 5 5 H 1.48503 * 109.47044 * 31.44362 * 3 2 1 6 6 H 1.48502 * 109.47378 * 151.44493 * 3 2 1 7 7 C 1.39698 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99866 * 344.04380 * 7 2 1 9 9 C 1.41589 * 120.00097 * 164.03510 * 7 2 1 10 10 C 1.41884 * 126.56167 * 341.56793 * 9 7 2 11 11 N 1.30317 * 108.04665 * 179.97438 * 10 9 7 12 12 N 1.39867 * 109.23587 * 359.97438 * 11 10 9 13 13 C 1.46507 * 125.68171 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.52917 * 25.12468 * 13 12 11 15 15 C 1.53125 * 109.50265 * 265.02937 * 13 12 11 16 16 C 1.53113 * 109.21100 * 182.36754 * 15 13 12 17 17 C 1.53174 * 109.20681 * 57.62471 * 16 15 13 18 18 N 1.46850 * 109.55743 * 300.85964 * 17 16 15 19 19 C 1.46844 * 111.20042 * 61.73983 * 18 17 16 20 20 C 1.34509 * 108.64628 * 0.24618 * 12 11 10 21 21 H 0.97001 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.07997 * 125.97382 * 359.96744 * 10 9 7 23 23 H 1.08998 * 109.51508 * 302.30425 * 15 13 12 24 24 H 1.08999 * 109.52197 * 62.43162 * 15 13 12 25 25 H 1.09000 * 109.50540 * 177.61970 * 16 15 13 26 26 H 1.08997 * 109.50416 * 297.74369 * 16 15 13 27 27 H 1.09001 * 109.44470 * 180.82963 * 17 16 15 28 28 H 1.09000 * 109.44091 * 60.87814 * 17 16 15 29 29 H 1.00909 * 110.99481 * 297.64292 * 18 17 16 30 30 H 1.08990 * 109.46548 * 178.24418 * 19 18 17 31 31 H 1.08999 * 109.44970 * 58.26896 * 19 18 17 32 32 H 1.08002 * 126.40577 * 179.71921 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4611 2.0642 -1.3996 5 1 1.4572 2.6437 0.7304 6 1 3.5567 1.4317 0.6692 7 6 2.0088 -1.2098 0.0005 8 1 1.5001 -2.1269 0.2581 9 6 3.3838 -1.2335 -0.3367 10 6 4.1005 -0.2266 -1.0336 11 7 5.3384 -0.6178 -1.1475 12 7 5.4833 -1.8706 -0.5427 13 6 6.7259 -2.6426 -0.4633 14 1 7.5791 -1.9670 -0.5240 15 6 6.7817 -3.6420 -1.6222 16 6 8.0537 -4.4853 -1.4994 17 6 8.0598 -5.1934 -0.1411 18 7 8.0059 -4.1946 0.9341 19 6 6.7704 -3.4042 0.8633 20 6 4.2905 -2.2514 -0.0512 21 1 -0.4850 0.8400 0.0004 22 1 3.6917 0.7015 -1.4048 23 1 5.9081 -4.2927 -1.5842 24 1 6.7927 -3.1017 -2.5688 25 1 8.0774 -5.2267 -2.2980 26 1 8.9278 -3.8387 -1.5763 27 1 8.9711 -5.7834 -0.0436 28 1 7.1927 -5.8501 -0.0705 29 1 8.8190 -3.5974 0.9139 30 1 6.7452 -2.6948 1.6903 31 1 5.9096 -4.0695 0.9292 32 1 4.0763 -3.1734 0.4689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257813641.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:22 Heat of formation + Delta-G solvation = 69.954038 kcal Electronic energy + Delta-G solvation = -14992.544528 eV Core-core repulsion = 12568.235943 eV Total energy + Delta-G solvation = -2424.308585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.01675 -38.31755 -33.54502 -32.46654 -31.56839 -29.48234 -28.47168 -24.91595 -23.73579 -22.62300 -20.78673 -20.20464 -18.88995 -17.31711 -16.07133 -15.61714 -14.83630 -14.72073 -14.51480 -14.15081 -13.64743 -12.98171 -12.69076 -12.57051 -12.26643 -11.87763 -11.39920 -11.31005 -11.04692 -10.95117 -10.83775 -10.66424 -10.44673 -9.83407 -9.20438 -9.07090 -8.64149 -8.08935 -7.38631 -6.57336 -4.02517 2.92465 3.17809 3.31365 3.39621 3.45696 3.98856 4.17756 4.22915 4.69315 4.82754 4.91309 4.96925 5.24145 5.37120 5.41834 5.44878 5.73149 5.77953 5.81313 5.96318 5.98654 6.16455 6.19781 6.29043 6.81516 6.93248 7.20386 7.22964 7.41400 7.75127 8.32852 8.55640 8.83808 8.95441 9.20110 10.50279 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056984 B = 0.007056 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.244133 B = 3967.126650 C = 4089.386522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.083 3.917 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.251 1.251 7 C -0.441 4.441 8 H 0.083 0.917 9 C -0.027 4.027 10 C -0.030 4.030 11 N -0.314 5.314 12 N -0.372 5.372 13 C 0.143 3.857 14 H 0.084 0.916 15 C -0.132 4.132 16 C -0.153 4.153 17 C 0.052 3.948 18 N -0.678 5.678 19 C 0.051 3.949 20 C -0.104 4.104 21 H 0.277 0.723 22 H 0.159 0.841 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.340 0.660 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.703 -6.433 -0.562 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.175 1.175 7 C -0.475 4.475 8 H 0.101 0.899 9 C -0.037 4.037 10 C -0.215 4.215 11 N -0.137 5.137 12 N -0.160 5.160 13 C 0.037 3.963 14 H 0.102 0.898 15 C -0.171 4.171 16 C -0.193 4.193 17 C -0.078 4.078 18 N -0.306 5.306 19 C -0.079 4.079 20 C -0.245 4.245 21 H 0.087 0.913 22 H 0.175 0.825 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.406 -6.565 -0.467 15.838 hybrid contribution -0.463 1.221 -0.645 1.457 sum 13.943 -5.343 -1.112 14.973 Atomic orbital electron populations 1.69742 1.07440 1.28966 1.41097 1.25739 0.94579 1.00459 0.92229 0.86674 0.80794 0.81351 0.78551 1.20005 1.21945 1.17545 1.18511 0.90902 0.95500 1.42586 0.89906 1.18301 0.94519 0.92095 0.98763 1.23791 0.92145 1.01254 1.04309 1.76425 1.20385 0.96614 1.20266 1.47466 1.06809 1.14262 1.47499 1.21615 0.86022 0.92027 0.96612 0.89835 1.22049 0.98240 0.97828 0.98995 1.22304 0.97867 0.99666 0.99449 1.22128 1.02763 0.94802 0.88058 1.60775 1.04588 1.18543 1.46651 1.22369 0.93534 0.96595 0.95431 1.22165 0.85050 1.03827 1.13462 0.91312 0.82464 0.91103 0.91341 0.91046 0.91888 0.90544 0.90587 0.84228 0.89733 0.89719 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.95 13.94 55.54 0.77 -23.17 16 2 C 0.08 2.29 5.50 -17.35 -0.10 2.20 16 3 Si 0.90 21.51 24.51 -169.99 -4.17 17.34 16 4 H -0.27 -6.29 6.68 56.52 0.38 -5.92 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.25 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.44 -12.50 9.91 -37.76 -0.37 -12.87 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C -0.03 -0.70 5.49 -106.84 -0.59 -1.29 16 10 C -0.03 -0.76 9.27 -16.80 -0.16 -0.91 16 11 N -0.31 -7.52 12.47 30.97 0.39 -7.14 16 12 N -0.37 -7.85 3.50 -53.83 -0.19 -8.04 16 13 C 0.14 2.26 3.33 -67.85 -0.23 2.03 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.13 -1.84 5.60 -26.61 -0.15 -1.99 16 16 C -0.15 -1.55 6.09 -26.58 -0.16 -1.71 16 17 C 0.05 0.51 6.56 -3.76 -0.02 0.48 16 18 N -0.68 -7.53 6.87 -113.74 -0.78 -8.31 16 19 C 0.05 0.71 5.49 -3.84 -0.02 0.69 16 20 C -0.10 -2.39 10.64 -15.99 -0.17 -2.56 16 21 H 0.28 7.20 8.30 -40.82 -0.34 6.87 16 22 H 0.16 3.89 4.22 -52.49 -0.22 3.67 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.34 3.30 8.86 -39.29 -0.35 2.95 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.22 7.09 -51.93 -0.37 0.86 16 32 H 0.15 3.06 7.22 -52.49 -0.38 2.68 16 LS Contribution 258.37 15.07 3.89 3.89 Total: -1.00 -30.20 258.37 -6.36 -36.56 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.31 Total: 4.81 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.96 Total: -15.93 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.19 Total: -46.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.17 Total: 17.34 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.20 -6.36 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257813641.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.516 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds