Wall clock time and date at job start Mon Mar 30 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48499 * 109.47297 * 271.44536 * 3 2 1 5 5 H 1.48503 * 109.47044 * 31.44362 * 3 2 1 6 6 H 1.48502 * 109.47378 * 151.44493 * 3 2 1 7 7 C 1.39698 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99866 * 344.04380 * 7 2 1 9 9 C 1.41589 * 120.00097 * 164.03510 * 7 2 1 10 10 C 1.41884 * 126.56167 * 341.56793 * 9 7 2 11 11 N 1.30317 * 108.04665 * 179.97438 * 10 9 7 12 12 N 1.39867 * 109.23587 * 359.97438 * 11 10 9 13 13 C 1.46507 * 125.68171 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.52917 * 25.12468 * 13 12 11 15 15 C 1.53125 * 109.50265 * 265.02937 * 13 12 11 16 16 C 1.53113 * 109.21100 * 182.36754 * 15 13 12 17 17 C 1.53174 * 109.20681 * 57.62471 * 16 15 13 18 18 N 1.46850 * 109.55743 * 300.85964 * 17 16 15 19 19 C 1.46844 * 111.20042 * 61.73983 * 18 17 16 20 20 C 1.34509 * 108.64628 * 0.24618 * 12 11 10 21 21 H 0.97001 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.07997 * 125.97382 * 359.96744 * 10 9 7 23 23 H 1.08998 * 109.51508 * 302.30425 * 15 13 12 24 24 H 1.08999 * 109.52197 * 62.43162 * 15 13 12 25 25 H 1.09000 * 109.50540 * 177.61970 * 16 15 13 26 26 H 1.08997 * 109.50416 * 297.74369 * 16 15 13 27 27 H 1.09001 * 109.44470 * 180.82963 * 17 16 15 28 28 H 1.09000 * 109.44091 * 60.87814 * 17 16 15 29 29 H 1.00909 * 110.99481 * 297.64292 * 18 17 16 30 30 H 1.08990 * 109.46548 * 178.24418 * 19 18 17 31 31 H 1.08999 * 109.44970 * 58.26896 * 19 18 17 32 32 H 1.08002 * 126.40577 * 179.71921 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4611 2.0642 -1.3996 5 1 1.4572 2.6437 0.7304 6 1 3.5567 1.4317 0.6692 7 6 2.0088 -1.2098 0.0005 8 1 1.5001 -2.1269 0.2581 9 6 3.3838 -1.2335 -0.3367 10 6 4.1005 -0.2266 -1.0336 11 7 5.3384 -0.6178 -1.1475 12 7 5.4833 -1.8706 -0.5427 13 6 6.7259 -2.6426 -0.4633 14 1 7.5791 -1.9670 -0.5240 15 6 6.7817 -3.6420 -1.6222 16 6 8.0537 -4.4853 -1.4994 17 6 8.0598 -5.1934 -0.1411 18 7 8.0059 -4.1946 0.9341 19 6 6.7704 -3.4042 0.8633 20 6 4.2905 -2.2514 -0.0512 21 1 -0.4850 0.8400 0.0004 22 1 3.6917 0.7015 -1.4048 23 1 5.9081 -4.2927 -1.5842 24 1 6.7927 -3.1017 -2.5688 25 1 8.0774 -5.2267 -2.2980 26 1 8.9278 -3.8387 -1.5763 27 1 8.9711 -5.7834 -0.0436 28 1 7.1927 -5.8501 -0.0705 29 1 8.8190 -3.5974 0.9139 30 1 6.7452 -2.6948 1.6903 31 1 5.9096 -4.0695 0.9292 32 1 4.0763 -3.1734 0.4689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257813641.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:22 Heat of formation + Delta-G solvation = 47.508135 kcal Electronic energy + Delta-G solvation = -14993.517856 eV Core-core repulsion = 12568.235943 eV Total energy + Delta-G solvation = -2425.281913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72970 -39.53411 -35.43980 -34.01644 -32.58597 -31.44724 -29.98277 -26.75617 -24.78546 -23.98870 -22.10581 -21.94106 -20.53621 -19.21587 -17.55808 -16.98215 -16.41545 -16.00412 -15.69724 -15.61633 -15.29392 -14.89287 -14.02543 -13.83327 -13.60701 -13.26085 -13.03346 -12.80161 -12.71879 -12.40167 -12.33973 -11.81418 -11.77068 -11.67237 -11.19029 -11.06965 -10.07153 -9.54001 -9.26523 -8.64087 -6.13439 1.06509 1.25769 1.43666 1.48556 1.84897 1.98205 2.21562 3.28749 3.31629 3.51541 3.74004 3.84647 3.99902 4.08984 4.16491 4.35143 4.43332 4.51596 4.73177 4.86917 4.89572 4.97146 5.06535 5.09985 5.23610 5.26701 5.41764 5.78132 5.87914 6.34204 6.39252 6.54098 6.79495 6.97177 7.18695 8.48438 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056984 B = 0.007056 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.244133 B = 3967.126650 C = 4089.386522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.051 0.949 9 C -0.067 4.067 10 C -0.046 4.046 11 N -0.324 5.324 12 N -0.357 5.357 13 C 0.131 3.869 14 H 0.093 0.907 15 C -0.128 4.128 16 C -0.141 4.141 17 C 0.052 3.948 18 N -0.673 5.673 19 C 0.062 3.938 20 C -0.072 4.072 21 H 0.284 0.716 22 H 0.161 0.839 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.352 0.648 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.556 -7.148 -0.611 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.168 4.168 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.069 0.931 9 C -0.078 4.078 10 C -0.229 4.229 11 N -0.149 5.149 12 N -0.145 5.145 13 C 0.027 3.973 14 H 0.111 0.889 15 C -0.166 4.166 16 C -0.181 4.181 17 C -0.077 4.077 18 N -0.302 5.302 19 C -0.069 4.069 20 C -0.216 4.216 21 H 0.094 0.906 22 H 0.177 0.823 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.171 0.829 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.305 -7.287 -0.531 18.784 hybrid contribution -1.152 1.214 -0.622 1.785 sum 16.153 -6.073 -1.152 17.296 Atomic orbital electron populations 1.69794 1.08635 1.30137 1.43112 1.26411 0.95242 1.03279 0.91895 0.85739 0.79006 0.77778 0.79211 1.18508 1.20704 1.18463 1.18513 0.92180 0.94887 1.44490 0.93067 1.18420 0.94418 0.94047 1.00870 1.23793 0.92508 1.01594 1.05030 1.76390 1.19688 0.97835 1.20947 1.48015 1.07994 1.13519 1.44931 1.22204 0.83783 0.92310 0.98954 0.88901 1.22000 1.00133 0.97374 0.97142 1.22258 0.95901 0.99564 1.00390 1.22227 1.04001 0.94376 0.87103 1.60777 1.03839 1.18293 1.47313 1.22213 0.94854 0.96227 0.93641 1.22561 0.85173 1.03219 1.10658 0.90632 0.82278 0.92186 0.92829 0.89283 0.90618 0.87822 0.91034 0.82918 0.90512 0.90398 0.81052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.80 13.94 21.79 0.30 -51.49 16 2 C 0.04 2.28 5.50 85.17 0.47 2.75 16 3 Si 0.96 44.94 24.51 68.60 1.68 46.62 16 4 H -0.26 -11.44 6.68 99.48 0.66 -10.78 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 7 C -0.47 -27.31 9.91 23.45 0.23 -27.08 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 C -0.07 -3.56 5.49 -21.30 -0.12 -3.67 16 10 C -0.05 -2.33 9.27 85.82 0.80 -1.54 16 11 N -0.32 -15.16 12.47 -55.94 -0.70 -15.85 16 12 N -0.36 -14.53 3.50 -324.21 -1.14 -15.66 16 13 C 0.13 3.82 3.33 45.04 0.15 3.97 16 14 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 15 C -0.13 -3.22 5.60 30.67 0.17 -3.05 16 16 C -0.14 -2.31 6.09 30.69 0.19 -2.12 16 17 C 0.05 0.80 6.56 86.37 0.57 1.37 16 18 N -0.67 -12.54 6.87 -513.78 -3.53 -16.07 16 19 C 0.06 1.54 5.49 86.32 0.47 2.01 16 20 C -0.07 -3.25 10.64 84.53 0.90 -2.35 16 21 H 0.28 15.12 8.30 -92.71 -0.77 14.35 16 22 H 0.16 7.80 4.22 -2.91 -0.01 7.79 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.35 5.41 8.86 -89.69 -0.79 4.61 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.06 7.09 -2.39 -0.02 2.04 16 32 H 0.17 6.83 7.22 -2.91 -0.02 6.81 16 Total: -1.00 -66.12 258.37 0.68 -65.44 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.23 Total: 16.73 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.83 Total: -29.71 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -5.06 Total: -99.08 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.68 Total: 46.62 kcal Total: -66.12 0.68 -65.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257813641.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.948 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds