Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31029 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48503 * 109.46985 * 271.41549 * 3 2 1 5 5 H 1.48507 * 109.47234 * 31.41581 * 3 2 1 6 6 H 1.48497 * 109.47279 * 151.41379 * 3 2 1 7 7 C 1.39689 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00025 * 344.08126 * 7 2 1 9 9 C 1.41600 * 120.00274 * 164.08703 * 7 2 1 10 10 C 1.41879 * 126.55362 * 341.50687 * 9 7 2 11 11 N 1.30320 * 108.04562 * 179.75217 * 10 9 7 12 12 N 1.39874 * 109.23060 * 0.44254 * 11 10 9 13 13 C 1.46504 * 125.67684 * 179.81304 * 12 11 10 14 14 C 1.53120 * 109.51735 * 264.68701 * 13 12 11 15 15 C 1.53045 * 109.30725 * 182.45628 * 14 13 12 16 16 N 1.46848 * 109.52153 * 59.16424 * 15 14 13 17 17 C 1.46850 * 111.19568 * 298.25713 * 16 15 14 18 18 C 1.53031 * 109.52601 * 61.74442 * 17 16 15 19 19 C 1.34506 * 108.64806 * 359.54349 * 12 11 10 20 20 H 0.97001 * 119.99996 * 359.97438 * 1 2 3 21 21 H 1.07998 * 125.98144 * 359.97438 * 10 9 7 22 22 H 1.08994 * 109.57413 * 24.84780 * 13 12 11 23 23 H 1.08997 * 109.50445 * 62.50472 * 14 13 12 24 24 H 1.09001 * 109.50636 * 302.42097 * 14 13 12 25 25 H 1.08994 * 109.46204 * 179.17394 * 15 14 13 26 26 H 1.08995 * 109.46566 * 299.14674 * 15 14 13 27 27 H 1.00906 * 110.99832 * 62.35109 * 16 15 14 28 28 H 1.09003 * 109.46013 * 181.75894 * 17 16 15 29 29 H 1.08997 * 109.46092 * 301.73114 * 17 16 15 30 30 H 1.09001 * 109.50673 * 60.75745 * 18 17 16 31 31 H 1.08996 * 109.50961 * 180.84153 * 18 17 16 32 32 H 1.08004 * 126.40608 * 180.22957 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.4618 2.0637 -1.3997 5 1 1.4570 2.6439 0.7298 6 1 3.5564 1.4318 0.6699 7 6 2.0088 -1.2097 0.0005 8 1 1.4998 -2.1270 0.2575 9 6 3.3841 -1.2334 -0.3357 10 6 4.1010 -0.2268 -1.0326 11 7 5.3401 -0.6156 -1.1412 12 7 5.4832 -1.8714 -0.5420 13 6 6.7257 -2.6435 -0.4623 14 6 6.7821 -3.6431 -1.6209 15 6 8.0518 -4.4887 -1.4983 16 7 8.0452 -5.2006 -0.2139 17 6 8.0399 -4.2605 0.9142 18 6 6.7699 -3.4081 0.8637 19 6 4.2915 -2.2495 -0.0460 20 1 -0.4850 0.8401 0.0004 21 1 3.6924 0.7011 -1.4046 22 1 7.5795 -1.9686 -0.5216 23 1 6.7948 -3.1028 -2.5674 24 1 5.9074 -4.2925 -1.5842 25 1 8.0871 -5.2111 -2.3137 26 1 8.9264 -3.8402 -1.5496 27 1 7.2646 -5.8375 -0.1576 28 1 8.0666 -4.8172 1.8509 29 1 8.9144 -3.6130 0.8515 30 1 5.8950 -4.0537 0.9401 31 1 6.7733 -2.7003 1.6925 32 1 4.0780 -3.1694 0.4782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257837909.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = 69.410580 kcal Electronic energy + Delta-G solvation = -14989.553019 eV Core-core repulsion = 12565.220867 eV Total energy + Delta-G solvation = -2424.332151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01438 -38.31741 -33.63302 -32.62075 -30.97217 -29.51413 -28.86129 -25.08318 -23.16069 -22.91754 -20.84442 -20.22450 -18.86982 -17.38619 -16.16925 -15.38269 -14.78140 -14.72732 -14.34470 -14.04573 -13.79476 -13.00175 -12.72847 -12.63819 -12.29982 -12.00653 -11.64983 -11.30788 -11.02498 -10.89669 -10.73995 -10.49187 -10.47760 -9.83642 -9.19817 -9.08098 -8.58524 -8.15703 -7.40170 -6.58690 -4.04105 2.91537 3.16767 3.30898 3.38428 3.47713 3.97839 4.16519 4.20711 4.65149 4.84766 5.00525 5.13969 5.28034 5.28869 5.41451 5.45639 5.68824 5.75376 5.86476 5.93912 5.95373 6.14784 6.19347 6.30417 6.85010 6.93146 7.20624 7.21344 7.40243 7.74399 8.32310 8.53807 8.82458 8.94822 9.18918 10.48959 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056840 B = 0.007041 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.489967 B = 3975.645820 C = 4101.116710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.083 3.917 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.442 4.442 8 H 0.082 0.918 9 C -0.027 4.027 10 C -0.030 4.030 11 N -0.313 5.313 12 N -0.374 5.374 13 C 0.178 3.822 14 C -0.168 4.168 15 C 0.061 3.939 16 N -0.688 5.688 17 C 0.062 3.938 18 C -0.165 4.165 19 C -0.104 4.104 20 H 0.277 0.723 21 H 0.159 0.841 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.342 0.658 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.949 -6.464 0.188 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.476 4.476 8 H 0.100 0.900 9 C -0.037 4.037 10 C -0.215 4.215 11 N -0.136 5.136 12 N -0.162 5.162 13 C 0.074 3.926 14 C -0.209 4.209 15 C -0.070 4.070 16 N -0.316 5.316 17 C -0.069 4.069 18 C -0.206 4.206 19 C -0.245 4.245 20 H 0.087 0.913 21 H 0.175 0.825 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.601 -6.227 -0.195 15.875 hybrid contribution -1.685 1.026 0.230 1.986 sum 12.917 -5.201 0.034 13.924 Atomic orbital electron populations 1.69745 1.07432 1.28973 1.41109 1.25739 0.94586 1.00465 0.92222 0.86668 0.80754 0.81327 0.78585 1.19958 1.21930 1.17599 1.18506 0.90905 0.95475 1.42671 0.89975 1.18301 0.94520 0.92232 0.98688 1.23791 0.92104 1.01295 1.04353 1.76425 1.20301 0.96317 1.20579 1.47595 1.06997 1.14103 1.47497 1.20775 0.85706 0.91512 0.94570 1.22752 0.99641 0.98886 0.99597 1.22020 0.96624 0.96554 0.91761 1.60686 1.49480 1.19275 1.02149 1.22014 0.96404 0.94043 0.94407 1.22638 1.00137 1.00326 0.97458 1.22121 0.85198 1.03885 1.13286 0.91304 0.82462 0.89595 0.90794 0.91293 0.90367 0.90745 0.84023 0.90152 0.90717 0.90808 0.90507 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.98 13.94 55.54 0.77 -23.21 16 2 C 0.08 2.29 5.50 -17.35 -0.10 2.20 16 3 Si 0.90 21.57 24.51 -169.99 -4.17 17.40 16 4 H -0.27 -6.30 6.68 56.52 0.38 -5.92 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.25 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.44 -12.56 9.91 -37.76 -0.37 -12.93 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 9 C -0.03 -0.72 5.49 -106.84 -0.59 -1.31 16 10 C -0.03 -0.77 9.27 -16.80 -0.16 -0.93 16 11 N -0.31 -7.55 12.47 30.97 0.39 -7.17 16 12 N -0.37 -7.95 3.51 -53.79 -0.19 -8.14 16 13 C 0.18 2.82 3.25 -67.80 -0.22 2.59 16 14 C -0.17 -2.29 5.68 -26.65 -0.15 -2.44 16 15 C 0.06 0.64 6.56 -3.83 -0.03 0.62 16 16 N -0.69 -7.07 6.87 -113.82 -0.78 -7.85 16 17 C 0.06 0.63 6.55 -3.84 -0.03 0.61 16 18 C -0.17 -2.16 5.04 -26.65 -0.13 -2.30 16 19 C -0.10 -2.41 10.64 -15.99 -0.17 -2.58 16 20 H 0.28 7.21 8.30 -40.82 -0.34 6.87 16 21 H 0.16 3.91 4.23 -52.49 -0.22 3.68 16 22 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.34 3.28 8.86 -39.29 -0.35 2.94 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.00 7.01 -51.93 -0.36 0.64 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.15 3.04 7.17 -52.48 -0.38 2.67 16 LS Contribution 258.27 15.07 3.89 3.89 Total: -1.00 -30.47 258.27 -6.33 -36.80 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.31 Total: 4.74 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.94 Total: -16.47 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.19 Total: -46.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.47 -6.33 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257837909.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.210 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds