Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47067 * 274.98295 * 3 2 1 5 5 H 1.48495 * 109.46917 * 34.98020 * 3 2 1 6 6 H 1.48501 * 109.47129 * 154.98101 * 3 2 1 7 7 C 1.38991 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99318 * 185.91390 * 7 2 1 9 9 N 1.37393 * 120.00445 * 5.91389 * 7 2 1 10 10 C 1.36280 * 126.12155 * 174.42069 * 9 7 2 11 11 C 1.35236 * 107.58530 * 180.15593 * 10 9 7 12 12 C 1.50701 * 126.00848 * 179.83708 * 11 10 9 13 13 C 1.52994 * 109.47373 * 269.72293 * 12 11 10 14 14 C 1.52998 * 109.47001 * 179.97438 * 13 12 11 15 15 N 1.46903 * 115.56445 * 330.68813 * 14 13 12 16 16 C 1.52998 * 117.50009 * 185.00169 * 14 13 12 17 17 C 1.52994 * 60.00138 * 252.50986 * 16 14 13 18 18 C 1.40134 * 107.97975 * 359.58739 * 11 10 9 19 19 N 1.30930 * 108.41049 * 0.25275 * 18 11 10 20 20 H 0.96996 * 120.00227 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.20566 * 0.02562 * 10 9 7 22 22 H 1.09007 * 109.46786 * 149.72176 * 12 11 10 23 23 H 1.09003 * 109.46725 * 29.72888 * 12 11 10 24 24 H 1.09007 * 109.47261 * 60.00173 * 13 12 11 25 25 H 1.08998 * 109.47284 * 300.00255 * 13 12 11 26 26 H 1.00905 * 110.99735 * 34.31146 * 15 14 13 27 27 H 1.00901 * 111.00148 * 158.26089 * 15 14 13 28 28 H 1.09004 * 117.50196 * 145.02466 * 16 14 13 29 29 H 1.09007 * 117.49972 * 0.02562 * 16 14 13 30 30 H 1.09006 * 117.50171 * 107.48971 * 17 16 14 31 31 H 1.09001 * 117.50157 * 252.48607 * 17 16 14 32 32 H 1.08010 * 125.79376 * 180.24073 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1072 -1.3948 5 1 1.5009 2.6200 0.8026 6 1 3.5931 1.4121 0.5921 7 6 2.0078 -1.2037 -0.0005 8 1 3.0836 -1.2061 0.0958 9 7 1.3264 -2.3904 -0.1237 10 6 1.8838 -3.6279 -0.2459 11 6 0.8746 -4.5227 -0.3447 12 6 1.0249 -6.0142 -0.4993 13 6 1.0766 -6.3702 -1.9864 14 6 1.2298 -7.8843 -2.1433 15 7 1.9383 -8.5663 -1.0519 16 6 1.4189 -8.4323 -3.5592 17 6 0.0912 -8.6424 -2.8286 18 6 -0.3354 -3.8197 -0.2721 19 7 -0.0659 -2.5452 -0.1399 20 1 -0.4850 0.8400 0.0004 21 1 2.9400 -3.8530 -0.2631 22 1 0.1752 -6.5150 -0.0351 23 1 1.9463 -6.3386 -0.0157 24 1 1.9263 -5.8694 -2.4505 25 1 0.1552 -6.0458 -2.4699 26 1 1.7449 -8.1262 -0.1647 27 1 1.7052 -9.5477 -1.0271 28 1 2.0689 -9.2989 -3.6809 29 1 1.4346 -7.7140 -4.3790 30 1 -0.7672 -8.0623 -3.1677 31 1 -0.1326 -9.6471 -2.4700 32 1 -1.3228 -4.2552 -0.3178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257844407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = 93.048253 kcal Electronic energy + Delta-G solvation = -14432.475893 eV Core-core repulsion = 12009.168748 eV Total energy + Delta-G solvation = -2423.307145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45516 -38.26335 -33.79173 -32.39917 -30.73653 -30.08150 -27.62817 -25.16089 -22.88142 -22.28630 -20.43757 -19.18370 -18.72055 -17.19616 -16.07777 -15.41686 -15.31324 -14.30623 -13.71500 -13.54658 -13.23214 -12.94119 -12.61543 -11.97108 -11.83181 -11.55871 -11.46413 -11.25413 -11.11642 -10.81232 -10.71814 -10.45072 -10.21387 -10.03553 -9.33416 -8.61091 -8.28737 -8.03231 -7.04364 -6.51578 -4.21505 2.99235 3.08223 3.12694 3.65967 3.87875 3.90225 4.25894 4.48094 4.80985 4.91188 5.02071 5.06868 5.13705 5.67421 5.71337 5.80713 5.93572 6.13455 6.17267 6.22374 6.29444 6.40273 6.60324 6.74322 6.92206 7.05811 7.22192 7.25875 7.47905 7.66203 7.94264 8.28166 8.75025 9.47950 9.72819 10.45636 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.061469 B = 0.005385 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.402692 B = 5198.666842 C = 5300.108531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.048 3.952 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.330 4.330 8 H 0.114 0.886 9 N -0.154 5.154 10 C -0.050 4.050 11 C -0.276 4.276 12 C -0.021 4.021 13 C -0.074 4.074 14 C 0.068 3.932 15 N -0.813 5.813 16 C -0.176 4.176 17 C -0.222 4.222 18 C -0.046 4.046 19 N -0.265 5.265 20 H 0.272 0.728 21 H 0.141 0.859 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.352 0.648 27 H 0.336 0.664 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -10.729 -2.833 11.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.462 4.462 8 H 0.132 0.868 9 N 0.079 4.921 10 C -0.200 4.200 11 C -0.290 4.290 12 C -0.060 4.060 13 C -0.112 4.112 14 C -0.026 4.026 15 N -0.344 5.344 16 C -0.214 4.214 17 C -0.261 4.261 18 C -0.222 4.222 19 N -0.094 5.094 20 H 0.083 0.917 21 H 0.158 0.842 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.148 0.852 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.942 -9.121 -3.037 9.808 hybrid contribution -0.246 -0.410 0.143 0.500 sum 1.696 -9.532 -2.893 10.105 Atomic orbital electron populations 1.70215 1.06135 1.27701 1.36362 1.25600 0.95631 1.00164 0.95421 0.85860 0.79522 0.80253 0.78803 1.19702 1.20178 1.18807 1.19881 0.92104 0.81036 1.53179 0.86805 1.44831 1.03732 1.04186 1.39304 1.21807 0.97704 0.85663 1.14810 1.19230 0.92649 0.94201 1.22954 1.19530 0.99988 0.92483 0.93961 1.21251 1.02220 0.88984 0.98771 1.21616 0.96197 0.94354 0.90475 1.58580 1.62060 1.06231 1.07498 1.23114 0.99138 1.03350 0.95800 1.23723 0.93408 1.01733 1.07277 1.23368 0.97221 0.92597 1.08982 1.78142 0.90843 1.15325 1.25133 0.91705 0.84163 0.93241 0.92300 0.91269 0.91497 0.83080 0.85151 0.89125 0.88677 0.88801 0.89531 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.98 11.84 55.50 0.66 -21.32 16 2 C 0.05 1.27 5.50 -17.50 -0.10 1.17 16 3 Si 0.93 19.36 29.56 -169.99 -5.02 14.33 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.33 -8.99 10.25 -14.78 -0.15 -9.14 16 8 H 0.11 2.81 7.84 -52.48 -0.41 2.40 16 9 N -0.15 -4.28 3.73 -11.54 -0.04 -4.33 16 10 C -0.05 -1.22 11.37 -16.64 -0.19 -1.41 16 11 C -0.28 -6.15 5.36 -104.98 -0.56 -6.71 16 12 C -0.02 -0.35 4.58 -27.89 -0.13 -0.48 16 13 C -0.07 -1.16 5.47 -26.73 -0.15 -1.31 16 14 C 0.07 0.89 3.12 -131.60 -0.41 0.48 16 15 N -0.81 -9.85 9.68 0.74 0.01 -9.84 16 16 C -0.18 -2.12 10.18 -26.74 -0.27 -2.39 16 17 C -0.22 -2.58 9.88 -26.73 -0.26 -2.84 16 18 C -0.05 -1.14 11.96 -17.23 -0.21 -1.34 16 19 N -0.26 -7.60 10.44 30.70 0.32 -7.28 16 20 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 21 H 0.14 3.00 8.06 -52.48 -0.42 2.57 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.95 6.85 -51.93 -0.36 0.59 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 26 H 0.35 4.18 6.37 -39.29 -0.25 3.93 16 27 H 0.34 3.36 8.78 -39.29 -0.35 3.02 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 30 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 31 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.15 3.14 8.06 -52.48 -0.42 2.71 16 LS Contribution 275.05 15.07 4.14 4.14 Total: -1.00 -30.74 275.05 -6.64 -37.39 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.28 Total: 10.87 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.43 Total: -23.97 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.94 Total: -42.76 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.74 -6.64 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257844407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.434 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds