Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86797 * 120.00278 * 2 1 4 4 H 1.48493 * 109.47229 * 271.25526 * 3 2 1 5 5 H 1.48500 * 109.46956 * 31.25351 * 3 2 1 6 6 H 1.48496 * 109.46914 * 151.25307 * 3 2 1 7 7 C 1.40170 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00484 * 344.18729 * 7 2 1 9 9 C 1.40240 * 119.99656 * 164.17934 * 7 2 1 10 10 C 1.39801 * 126.66094 * 341.13889 * 9 7 2 11 11 C 1.38704 * 107.53495 * 180.25731 * 10 9 7 12 12 N 1.31242 * 109.07645 * 359.74280 * 11 10 9 13 13 N 1.37455 * 126.65754 * 160.95185 * 9 7 2 14 14 C 1.46503 * 126.20348 * 0.02562 * 13 9 7 15 15 H 1.09002 * 109.53674 * 359.81583 * 14 13 9 16 16 C 1.53124 * 109.50085 * 119.91225 * 14 13 9 17 17 C 1.53118 * 109.15952 * 177.59552 * 16 14 13 18 18 C 1.53037 * 109.27990 * 302.34667 * 17 16 14 19 19 N 1.46846 * 109.52398 * 59.17663 * 18 17 16 20 20 C 1.46840 * 111.20223 * 298.26192 * 19 18 17 21 21 H 0.97001 * 119.99669 * 359.97438 * 1 2 3 22 22 H 1.07998 * 126.23957 * 359.97438 * 10 9 7 23 23 H 1.07999 * 125.46626 * 179.71827 * 11 10 9 24 24 H 1.08994 * 109.52262 * 57.69466 * 16 14 13 25 25 H 1.08998 * 109.57311 * 297.52728 * 16 14 13 26 26 H 1.08994 * 109.50409 * 182.40118 * 17 16 14 27 27 H 1.08999 * 109.50226 * 62.28638 * 17 16 14 28 28 H 1.09002 * 109.46460 * 299.16481 * 18 17 16 29 29 H 1.09003 * 109.45367 * 179.18906 * 18 17 16 30 30 H 1.00912 * 110.99775 * 62.35817 * 19 18 17 31 31 H 1.09001 * 109.46528 * 181.75706 * 20 19 18 32 32 H 1.09002 * 109.46121 * 301.72699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4626 2.0617 -1.3997 5 1 1.4526 2.6448 0.7264 6 1 3.5522 1.4325 0.6733 7 6 2.0083 -1.2140 -0.0005 8 1 1.4990 -2.1317 0.2539 9 6 3.3709 -1.2369 -0.3317 10 6 4.0789 -0.2485 -1.0218 11 6 5.3926 -0.6786 -1.1366 12 7 5.5125 -1.8502 -0.5576 13 7 4.2703 -2.2339 -0.0376 14 6 3.9802 -3.4758 0.6833 15 1 2.9270 -3.4974 0.9631 16 6 4.2949 -4.6744 -0.2162 17 6 4.0463 -5.9678 0.5647 18 6 4.9095 -5.9688 1.8284 19 7 4.5703 -4.8037 2.6554 20 6 4.8453 -3.5491 1.9436 21 1 -0.4850 0.8401 0.0004 22 1 3.6755 0.6788 -1.4009 23 1 6.1891 -0.1365 -1.6245 24 1 5.3384 -4.6319 -0.5278 25 1 3.6508 -4.6502 -1.0953 26 1 4.3092 -6.8241 -0.0563 27 1 2.9941 -6.0286 0.8427 28 1 5.9621 -5.9219 1.5493 29 1 4.7240 -6.8820 2.3940 30 1 3.6089 -4.8437 2.9595 31 1 4.6135 -2.7048 2.5929 32 1 5.8982 -3.5136 1.6639 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257854193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = 37.454198 kcal Electronic energy + Delta-G solvation = -15290.034670 eV Core-core repulsion = 12864.316786 eV Total energy + Delta-G solvation = -2425.717884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35100 -39.41854 -35.62141 -33.93624 -32.51558 -31.84272 -29.46017 -26.93773 -24.72096 -24.10871 -22.40742 -21.64646 -20.35887 -18.95542 -17.84380 -16.93470 -16.19849 -16.01149 -15.67250 -15.42984 -15.18432 -14.63630 -14.06079 -13.94129 -13.53334 -13.41865 -13.26986 -12.97298 -12.53162 -12.37271 -12.27028 -11.82649 -11.77481 -11.56211 -11.26257 -10.88787 -10.08456 -9.52937 -8.97397 -8.96052 -6.66209 1.08168 1.32723 1.49814 1.60693 2.05406 2.16003 2.25053 3.06726 3.31417 3.52961 3.87056 3.93235 4.01729 4.14232 4.34827 4.42702 4.54465 4.76509 4.79523 4.90580 4.93058 4.97712 5.03308 5.09127 5.23517 5.24768 5.40764 5.82760 5.92682 6.11948 6.35310 6.40535 6.53192 6.96014 7.42489 8.10665 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035432 B = 0.009448 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.063471 B = 2962.841610 C = 3331.793387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.067 3.933 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.064 0.936 9 C 0.237 3.763 10 C -0.442 4.442 11 C 0.063 3.937 12 N -0.380 5.380 13 N -0.418 5.418 14 C 0.142 3.858 15 H 0.077 0.923 16 C -0.119 4.119 17 C -0.144 4.144 18 C 0.056 3.944 19 N -0.677 5.677 20 C 0.071 3.929 21 H 0.299 0.701 22 H 0.120 0.880 23 H 0.191 0.809 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.348 0.652 31 H 0.061 0.939 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -6.718 2.655 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.152 4.152 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.116 3.884 10 C -0.472 4.472 11 C -0.121 4.121 12 N -0.201 5.201 13 N -0.205 5.205 14 C 0.038 3.962 15 H 0.096 0.904 16 C -0.157 4.157 17 C -0.184 4.184 18 C -0.073 4.073 19 N -0.306 5.306 20 C -0.060 4.060 21 H 0.110 0.890 22 H 0.138 0.862 23 H 0.207 0.793 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.668 -7.735 3.372 10.755 hybrid contribution -1.555 1.532 -1.205 2.493 sum 5.114 -6.204 2.167 8.327 Atomic orbital electron populations 1.69593 1.08840 1.31914 1.35833 1.26537 0.95316 1.03738 0.89588 0.85331 0.78851 0.76000 0.79484 1.18777 1.20735 1.18117 1.18399 0.91070 0.96115 1.45452 0.91775 1.18936 0.90341 0.87643 0.91494 1.21315 0.96398 1.05465 1.24045 1.23457 0.96836 0.93614 0.98145 1.76802 1.02990 1.16883 1.23432 1.48835 1.05417 1.17330 1.48930 1.21844 0.99778 0.81477 0.93126 0.90443 1.21836 1.01664 0.94340 0.97875 1.22259 1.01248 0.96308 0.98572 1.22171 0.99519 0.93712 0.91882 1.60770 1.29185 1.01145 1.39483 1.22052 0.99343 0.92903 0.91695 0.89042 0.86241 0.79262 0.91859 0.93777 0.88975 0.91338 0.91000 0.87636 0.83351 0.92064 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.25 13.92 21.87 0.30 -43.95 16 2 C 0.07 3.54 5.51 85.32 0.47 4.01 16 3 Si 0.98 43.57 24.53 68.60 1.68 45.25 16 4 H -0.26 -11.24 6.69 99.48 0.67 -10.58 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.26 -12.00 6.56 99.48 0.65 -11.35 16 7 C -0.47 -26.21 9.44 23.23 0.22 -25.99 16 8 H 0.06 3.71 7.21 -2.91 -0.02 3.69 16 9 C 0.24 12.52 6.32 39.13 0.25 12.77 16 10 C -0.44 -22.14 8.12 22.76 0.18 -21.96 16 11 C 0.06 2.83 11.93 84.89 1.01 3.84 16 12 N -0.38 -17.85 12.40 -57.57 -0.71 -18.56 16 13 N -0.42 -19.95 3.35 -318.64 -1.07 -21.02 16 14 C 0.14 5.58 3.09 45.05 0.14 5.72 16 15 H 0.08 3.22 6.86 -2.39 -0.02 3.20 16 16 C -0.12 -3.99 5.55 30.68 0.17 -3.82 16 17 C -0.14 -3.43 6.08 30.65 0.19 -3.25 16 18 C 0.06 1.24 6.55 86.33 0.57 1.81 16 19 N -0.68 -18.10 6.87 -514.01 -3.53 -21.63 16 20 C 0.07 2.45 6.10 86.33 0.53 2.97 16 21 H 0.30 14.17 8.29 -92.71 -0.77 13.40 16 22 H 0.12 5.81 4.23 -2.91 -0.01 5.80 16 23 H 0.19 6.79 8.06 -2.91 -0.02 6.76 16 24 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.35 8.53 8.86 -89.68 -0.79 7.73 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -61.23 258.76 0.63 -60.60 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.23 Total: 23.20 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.72 Total: -23.89 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -5.01 Total: -105.16 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.68 Total: 45.25 kcal Total: -61.23 0.63 -60.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257854193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.053 kcal (2) G-P(sol) polarization free energy of solvation -61.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds