Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86806 * 119.99806 * 2 1 4 4 H 1.48506 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46995 * 299.99363 * 3 2 1 6 6 H 1.48502 * 109.47159 * 59.99549 * 3 2 1 7 7 C 1.40168 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.40238 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.39805 * 126.65801 * 0.02562 * 9 7 2 11 11 C 1.38705 * 107.53461 * 179.97438 * 10 9 7 12 12 N 1.31233 * 109.07701 * 359.97438 * 11 10 9 13 13 N 1.37452 * 126.66135 * 180.02562 * 9 7 2 14 14 C 1.46500 * 126.20343 * 0.02562 * 13 9 7 15 15 H 1.08995 * 109.50334 * 359.90583 * 14 13 9 16 16 C 1.53120 * 109.50484 * 239.78395 * 14 13 9 17 17 C 1.53119 * 109.15914 * 182.40622 * 16 14 13 18 18 C 1.53041 * 109.28154 * 57.65558 * 17 16 14 19 19 N 1.46851 * 109.52024 * 300.82216 * 18 17 16 20 20 C 1.46844 * 111.20051 * 61.74008 * 19 18 17 21 21 H 0.97002 * 120.00581 * 0.02562 * 1 2 3 22 22 H 1.08004 * 126.23702 * 0.24293 * 10 9 7 23 23 H 1.08000 * 125.45688 * 179.97438 * 11 10 9 24 24 H 1.09001 * 109.52407 * 302.30957 * 16 14 13 25 25 H 1.08997 * 109.52056 * 62.49933 * 16 14 13 26 26 H 1.09004 * 109.50512 * 297.71304 * 17 16 14 27 27 H 1.09002 * 109.50259 * 177.59356 * 17 16 14 28 28 H 1.09000 * 109.46331 * 180.80435 * 18 17 16 29 29 H 1.09001 * 109.45243 * 60.82566 * 18 17 16 30 30 H 1.00907 * 110.99457 * 297.64446 * 19 18 17 31 31 H 1.09002 * 109.46364 * 178.24327 * 20 19 18 32 32 H 1.08999 * 109.45568 * 58.26926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3465 0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8826 2.3966 1.2125 7 6 2.0085 -1.2138 0.0005 8 1 3.0885 -1.2138 0.0010 9 6 1.3073 -2.4284 0.0005 10 6 -0.0813 -2.5905 -0.0005 11 6 -0.3429 -3.9527 -0.0006 12 7 0.7941 -4.6078 -0.0004 13 7 1.8519 -3.6904 0.0015 14 6 3.2802 -4.0165 0.0033 15 1 3.8636 -3.0959 0.0021 16 6 3.6184 -4.8388 -1.2433 17 6 5.0992 -5.2262 -1.2033 18 6 5.3827 -6.0073 0.0819 19 7 5.0436 -5.1778 1.2452 20 6 3.6163 -4.8327 1.2535 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8165 -1.7993 -0.0051 23 1 -1.3250 -4.4020 -0.0010 24 1 3.0063 -5.7406 -1.2620 25 1 3.4211 -4.2450 -2.1358 26 1 5.7119 -4.3249 -1.2239 27 1 5.3362 -5.8479 -2.0667 28 1 6.4393 -6.2723 0.1203 29 1 4.7797 -6.9153 0.0953 30 1 5.6165 -4.3477 1.2767 31 1 3.3900 -4.2445 2.1429 32 1 3.0219 -5.7463 1.2614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257854195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 37.114599 kcal Electronic energy + Delta-G solvation = -15231.415203 eV Core-core repulsion = 12805.682593 eV Total energy + Delta-G solvation = -2425.732610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09987 -39.32563 -35.60093 -33.83579 -32.48750 -31.02164 -29.11550 -27.08955 -24.69377 -24.04234 -22.04761 -21.51223 -20.25480 -18.89854 -17.53483 -16.90794 -16.02721 -15.95306 -15.61662 -15.22038 -14.79661 -14.04900 -13.95551 -13.70667 -13.47995 -13.32502 -13.24599 -12.94516 -12.51235 -12.34832 -12.17907 -11.81707 -11.68718 -11.60591 -11.32859 -10.66108 -9.94437 -9.41326 -8.72319 -8.53942 -6.50725 1.24275 1.39506 1.55588 1.76382 2.12407 2.33764 2.55036 3.31976 3.33435 3.57559 3.90723 3.97415 4.05169 4.16242 4.39875 4.48451 4.59874 4.81346 4.88046 4.95420 4.98063 5.09032 5.12249 5.21936 5.40699 5.52064 5.83536 5.94811 6.07644 6.40858 6.48306 6.72898 6.84037 7.23709 7.66183 8.37756 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.009544 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.622836 B = 2932.978664 C = 3566.527145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.225 3.775 10 C -0.396 4.396 11 C 0.031 3.969 12 N -0.399 5.399 13 N -0.426 5.426 14 C 0.144 3.856 15 H 0.082 0.918 16 C -0.118 4.118 17 C -0.143 4.143 18 C 0.056 3.944 19 N -0.677 5.677 20 C 0.071 3.929 21 H 0.287 0.713 22 H 0.143 0.857 23 H 0.173 0.827 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.350 0.650 31 H 0.059 0.941 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 -2.978 -0.902 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.514 4.514 8 H 0.098 0.902 9 C 0.105 3.895 10 C -0.427 4.427 11 C -0.150 4.150 12 N -0.221 5.221 13 N -0.215 5.215 14 C 0.040 3.960 15 H 0.100 0.900 16 C -0.157 4.157 17 C -0.182 4.182 18 C -0.073 4.073 19 N -0.306 5.306 20 C -0.060 4.060 21 H 0.098 0.902 22 H 0.161 0.839 23 H 0.190 0.810 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.077 0.923 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.436 -4.643 -0.455 11.432 hybrid contribution -0.873 2.186 -0.809 2.489 sum 9.563 -2.457 -1.264 9.954 Atomic orbital electron populations 1.69815 1.09026 1.29969 1.35429 1.26806 0.95755 1.04470 0.91384 0.84881 0.79013 0.75134 0.78946 1.17759 1.18974 1.18894 1.18967 0.94430 0.89377 1.48595 0.90230 1.19198 0.92782 0.85169 0.92331 1.22215 0.95547 0.95368 1.29565 1.23534 0.96927 0.94140 1.00386 1.76702 0.94193 1.16886 1.34356 1.48808 1.04347 1.03148 1.65164 1.21772 0.77618 0.98802 0.97856 0.89969 1.21822 0.98399 0.99295 0.96137 1.22255 0.93308 1.01697 1.00962 1.22167 1.02766 0.95931 0.86452 1.60752 1.02909 1.24315 1.42583 1.22042 0.90127 0.98610 0.95251 0.90196 0.83931 0.80967 0.92638 0.93729 0.90806 0.89125 0.87458 0.91472 0.83199 0.92268 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.89 10.30 21.87 0.23 -42.66 16 2 C 0.03 1.62 5.50 85.32 0.47 2.09 16 3 Si 1.00 37.35 29.56 68.60 2.03 39.38 16 4 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.48 -25.62 9.04 23.23 0.21 -25.41 16 8 H 0.08 3.98 6.75 -2.91 -0.02 3.96 16 9 C 0.23 12.72 6.75 39.13 0.26 12.98 16 10 C -0.40 -22.70 9.77 22.76 0.22 -22.48 16 11 C 0.03 1.62 11.93 84.89 1.01 2.64 16 12 N -0.40 -20.78 12.40 -57.57 -0.71 -21.50 16 13 N -0.43 -21.65 3.35 -318.66 -1.07 -22.72 16 14 C 0.14 5.80 3.09 45.05 0.14 5.94 16 15 H 0.08 3.31 6.72 -2.39 -0.02 3.29 16 16 C -0.12 -4.11 5.55 30.67 0.17 -3.94 16 17 C -0.14 -3.41 6.08 30.65 0.19 -3.23 16 18 C 0.06 1.26 6.55 86.33 0.57 1.83 16 19 N -0.68 -18.30 6.87 -513.99 -3.53 -21.83 16 20 C 0.07 2.54 6.10 86.33 0.53 3.06 16 21 H 0.29 13.48 8.29 -92.71 -0.77 12.72 16 22 H 0.14 8.48 5.73 -2.91 -0.02 8.46 16 23 H 0.17 7.57 8.06 -2.91 -0.02 7.55 16 24 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.35 8.31 8.86 -89.69 -0.79 7.52 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -64.00 263.72 1.03 -62.97 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.33 Total: 32.87 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 3.77 Total: -26.50 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -5.09 Total: -108.71 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -64.00 1.03 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257854195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.083 kcal (2) G-P(sol) polarization free energy of solvation -64.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds