Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35699 * 116.99975 * 2 1 4 4 C 1.38427 * 120.13317 * 0.02562 * 3 2 1 5 5 C 1.38199 * 120.25269 * 179.97438 * 4 3 2 6 6 C 1.39520 * 120.50944 * 359.97438 * 5 4 3 7 7 N 1.39847 * 119.86828 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99753 * 7.01775 * 7 6 5 9 9 C 1.46498 * 120.00013 * 187.02179 * 7 6 5 10 10 C 1.38063 * 120.26404 * 359.77759 * 6 5 4 11 11 C 1.40658 * 119.74032 * 0.47587 * 10 6 5 12 12 C 1.41146 * 120.24970 * 179.78668 * 11 10 6 13 13 H 1.08001 * 119.99986 * 152.08368 * 12 11 10 14 14 C 1.39898 * 119.99714 * 332.36923 * 12 11 10 15 15 N 1.30879 * 120.00196 * 348.55361 * 14 12 11 16 16 Si 1.86800 * 119.99906 * 168.56382 * 14 12 11 17 17 H 1.48501 * 109.47607 * 89.99261 * 16 14 12 18 18 H 1.48505 * 109.47329 * 209.99769 * 16 14 12 19 19 H 1.48502 * 109.47013 * 329.99120 * 16 14 12 20 20 H 1.09002 * 109.47514 * 299.99535 * 1 2 3 21 21 H 1.09002 * 109.47165 * 60.00518 * 1 2 3 22 22 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.08006 * 119.87571 * 0.02562 * 4 3 2 24 24 H 1.07998 * 119.74621 * 180.02562 * 5 4 3 25 25 H 1.09005 * 109.47195 * 90.00602 * 8 7 6 26 26 H 1.09002 * 109.47214 * 209.99920 * 8 7 6 27 27 H 1.08996 * 109.47428 * 330.00136 * 8 7 6 28 28 H 1.09005 * 109.46978 * 354.18947 * 9 7 6 29 29 H 1.08996 * 109.47366 * 114.19039 * 9 7 6 30 30 H 1.09000 * 109.46868 * 234.19396 * 9 7 6 31 31 H 1.07992 * 120.13122 * 180.25557 * 10 6 5 32 32 H 0.97004 * 119.99905 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2938 2.3718 0.0005 5 6 1.9186 3.6044 0.0011 6 6 3.3110 3.6928 0.0016 7 7 3.9293 4.9471 0.0027 8 6 3.1236 6.1607 0.1583 9 6 5.3826 5.0475 -0.1518 10 6 4.0809 2.5467 0.0063 11 6 3.4563 1.2865 0.0003 12 6 4.2329 0.1079 0.0004 13 1 3.8381 -0.7989 0.4343 14 6 5.5164 0.1161 -0.5561 15 7 5.9131 1.1377 -1.2714 16 14 6.6640 -1.3315 -0.2784 17 1 6.4711 -2.3308 -1.3599 18 1 8.0711 -0.8568 -0.2883 19 1 6.3622 -1.9578 1.0338 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2152 2.3154 0.0014 24 1 1.3245 4.5063 0.0019 25 1 3.0361 6.4056 1.2168 26 1 3.6045 6.9860 -0.3669 27 1 2.1307 5.9937 -0.2593 28 1 5.8181 4.0482 -0.1501 29 1 5.6144 5.5432 -1.0945 30 1 5.7967 5.6257 0.6742 31 1 5.1585 2.6176 0.0108 32 1 6.8032 1.1435 -1.6570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257977253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = -19.340397 kcal Electronic energy + Delta-G solvation = -15083.796273 eV Core-core repulsion = 12623.322839 eV Total energy + Delta-G solvation = -2460.473434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.41941 -38.69256 -36.42811 -34.96699 -31.70364 -30.11195 -29.02884 -27.97430 -26.63712 -24.83137 -22.63010 -21.13215 -19.31723 -18.13281 -17.31086 -16.78112 -16.37621 -16.13467 -15.64612 -15.28154 -15.17645 -14.51531 -13.81428 -13.49601 -13.36810 -13.20294 -12.90840 -12.79729 -12.73044 -12.67888 -12.18983 -12.08351 -11.74442 -11.71434 -11.08339 -10.97072 -9.80869 -9.26387 -8.53912 -7.57932 -6.20196 1.02226 1.28752 1.39818 1.52336 1.56829 2.26976 2.62534 2.84475 3.06855 3.78165 4.29600 4.35793 4.50090 4.54052 4.55015 4.58513 4.67540 4.77954 4.90180 4.93520 4.97709 5.17316 5.23370 5.41238 5.46086 5.86008 5.92417 5.97569 6.21643 6.46717 6.76721 6.90165 7.01609 7.04106 7.38892 8.45530 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.012677 C = 0.007933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.826621 B = 2208.189322 C = 3528.810197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C -0.041 4.041 4 C -0.148 4.148 5 C -0.271 4.271 6 C 0.186 3.814 7 N -0.656 5.656 8 C 0.101 3.899 9 C 0.098 3.902 10 C -0.233 4.233 11 C 0.088 3.912 12 C -0.483 4.483 13 H 0.065 0.935 14 C 0.033 3.967 15 N -0.830 5.830 16 Si 0.980 3.020 17 H -0.266 1.266 18 H -0.263 1.263 19 H -0.263 1.263 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.109 0.891 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 4.934 1.555 5.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C -0.086 4.086 4 C -0.167 4.167 5 C -0.294 4.294 6 C 0.088 3.912 7 N -0.372 5.372 8 C -0.041 4.041 9 C -0.045 4.045 10 C -0.257 4.257 11 C 0.085 3.915 12 C -0.513 4.513 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.458 5.458 16 Si 0.801 3.199 17 H -0.191 1.191 18 H -0.187 1.187 19 H -0.187 1.187 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.127 0.873 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.610 4.994 1.415 5.810 hybrid contribution 0.237 -0.490 -0.076 0.549 sum -2.373 4.504 1.340 5.265 Atomic orbital electron populations 1.23023 0.79099 1.03895 1.00701 1.85890 1.21095 1.28033 1.90873 1.19372 0.92324 0.83900 1.12976 1.20710 0.98552 0.91770 1.05689 1.20115 0.92012 0.96785 1.20504 1.17847 0.91946 0.85348 0.96098 1.46304 1.06072 1.03085 1.81785 1.21564 0.95976 0.86002 1.00576 1.21555 0.80523 1.02136 1.00313 1.20815 0.99484 0.89852 1.15525 1.17257 0.88714 0.94142 0.91425 1.19505 0.99657 0.96850 1.35281 0.91634 1.26639 0.99177 0.99993 0.92195 1.69900 1.19635 1.31468 1.24789 0.85246 0.77154 0.77915 0.79572 1.19112 1.18702 1.18723 0.93133 0.93441 0.87301 0.85652 0.86048 0.93792 0.90379 0.91779 0.92278 0.93113 0.91910 0.85820 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 16 2 O -0.34 -16.82 9.81 -90.18 -0.88 -17.70 16 3 C -0.04 -2.16 6.72 23.08 0.16 -2.00 16 4 C -0.15 -6.80 9.02 22.31 0.20 -6.60 16 5 C -0.27 -12.20 9.27 22.57 0.21 -11.99 16 6 C 0.19 8.95 6.53 38.13 0.25 9.20 16 7 N -0.66 -25.82 3.41 -747.33 -2.55 -28.37 16 8 C 0.10 2.97 10.38 127.77 1.33 4.30 16 9 C 0.10 3.48 10.62 127.77 1.36 4.84 16 10 C -0.23 -12.74 7.91 22.82 0.18 -12.56 16 11 C 0.09 5.08 5.57 -21.21 -0.12 4.96 16 12 C -0.48 -28.04 8.70 23.39 0.20 -27.84 16 13 H 0.07 3.83 7.66 -2.91 -0.02 3.81 16 14 C 0.03 1.74 5.25 85.24 0.45 2.18 16 15 N -0.83 -44.74 10.80 21.82 0.24 -44.50 16 16 Si 0.98 40.57 29.57 68.60 2.03 42.60 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 21 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 22 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 23 H 0.13 4.84 6.28 -2.91 -0.02 4.82 16 24 H 0.12 4.64 5.98 -2.91 -0.02 4.62 16 25 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 27 H 0.06 1.85 5.94 -2.39 -0.01 1.83 16 28 H 0.06 2.47 5.31 -2.38 -0.01 2.46 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 6.91 3.82 -2.91 -0.01 6.90 16 32 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 Total: -1.00 -66.24 263.95 5.27 -60.97 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.12 Total: 20.44 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 5.32 Total: -33.43 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.32 Total: -72.87 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.88 Total: -17.70 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -66.24 5.27 -60.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257977253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.627 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds