Wall clock time and date at job start Mon Mar 30 2020 02:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00273 * 2 1 4 4 H 1.09003 * 109.46837 * 323.58338 * 3 2 1 5 5 C 1.50698 * 109.47312 * 203.57623 * 3 2 1 6 6 H 1.07993 * 120.00110 * 239.72345 * 5 3 2 7 7 C 1.37878 * 119.99590 * 60.00378 * 5 3 2 8 8 N 1.31512 * 120.00376 * 359.71817 * 7 5 3 9 9 Si 1.86802 * 119.99965 * 179.72349 * 7 5 3 10 10 H 1.48506 * 109.46915 * 59.99509 * 9 7 5 11 11 H 1.48492 * 109.47394 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47200 * 299.99771 * 9 7 5 13 13 C 1.50708 * 109.47197 * 83.57721 * 3 2 1 14 14 C 1.38266 * 119.94017 * 46.14609 * 13 3 2 15 15 C 1.38147 * 120.05103 * 179.72524 * 14 13 3 16 16 C 1.38738 * 119.94394 * 0.55103 * 15 14 13 17 17 O 1.35895 * 120.05363 * 179.75083 * 16 15 14 18 18 C 1.42899 * 117.00234 * 359.97438 * 17 16 15 19 19 C 1.38731 * 119.88562 * 359.72428 * 16 15 14 20 20 C 1.38137 * 119.94675 * 0.02562 * 19 16 15 21 21 H 1.09005 * 109.46857 * 64.62862 * 1 2 3 22 22 H 1.09001 * 109.47022 * 184.62958 * 1 2 3 23 23 H 1.09001 * 109.47279 * 304.62681 * 1 2 3 24 24 H 1.00902 * 110.99745 * 123.94976 * 2 1 3 25 25 H 0.97003 * 120.00378 * 180.02562 * 8 7 5 26 26 H 1.08003 * 119.97304 * 0.02562 * 14 13 3 27 27 H 1.07999 * 120.02724 * 180.27552 * 15 14 13 28 28 H 1.09006 * 109.47203 * 300.00026 * 18 17 16 29 29 H 1.08994 * 109.46992 * 60.00140 * 18 17 16 30 30 H 1.08996 * 109.47132 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.02323 * 179.97438 * 19 16 15 32 32 H 1.08006 * 119.97164 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3536 2.0070 -0.6101 5 6 3.3912 1.3737 -0.5683 6 1 4.2178 1.7254 0.0312 7 6 3.6120 0.9322 -1.8556 8 7 2.6055 0.5039 -2.5857 9 14 5.3410 0.9422 -2.5628 10 1 6.2205 0.0809 -1.7322 11 1 5.3101 0.4223 -3.9534 12 1 5.8670 2.3309 -2.5647 13 6 2.0272 1.8974 1.4120 14 6 2.5338 1.1110 2.4301 15 6 2.5691 1.5930 3.7243 16 6 2.0852 2.8628 4.0038 17 8 2.1143 3.3372 5.2769 18 6 2.6565 2.4743 6.2786 19 6 1.5722 3.6476 2.9813 20 6 1.5438 3.1630 1.6880 21 1 -0.3633 0.4404 -0.9286 22 1 -0.3633 -1.0243 0.0829 23 1 -0.3634 0.5839 0.8456 24 1 1.8305 -0.5261 0.7814 25 1 2.7609 0.1929 -3.4913 26 1 2.9066 0.1209 2.2126 27 1 2.9691 0.9801 4.5185 28 1 2.0718 1.5553 6.3218 29 1 3.6908 2.2356 6.0314 30 1 2.6199 2.9736 7.2468 31 1 1.1945 4.6363 3.1964 32 1 1.1449 3.7738 0.8916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259173214.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:41 Heat of formation + Delta-G solvation = -7.326158 kcal Electronic energy + Delta-G solvation = -14841.885038 eV Core-core repulsion = 12381.932581 eV Total energy + Delta-G solvation = -2459.952457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70284 -37.52531 -34.75773 -31.98292 -30.54130 -29.88120 -27.52447 -26.17388 -23.70269 -22.73534 -21.59125 -19.90326 -17.80210 -16.50888 -15.75360 -15.50045 -15.17519 -14.31665 -14.17225 -13.60669 -13.24557 -13.03549 -12.65161 -12.24080 -12.20116 -11.79247 -11.64860 -11.19602 -10.90476 -10.69149 -10.64195 -10.54870 -10.17960 -9.66716 -9.15403 -8.45590 -8.36894 -7.47026 -6.86203 -5.84328 -3.97642 1.89433 2.05240 3.37905 3.42370 3.45328 3.54955 4.35052 4.54834 5.09877 5.21477 5.28580 5.34356 5.40552 5.49939 5.81726 5.89674 6.02253 6.05835 6.22894 6.32813 6.44474 6.53161 6.80960 6.82520 7.03901 7.07882 7.31044 7.51065 7.80545 7.96206 8.25273 8.62917 8.81344 9.15892 9.70053 11.20268 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.007794 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.695447 B = 3591.490368 C = 3980.606991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.651 5.651 3 C 0.254 3.746 4 H 0.043 0.957 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.085 3.915 8 N -0.851 5.851 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 C -0.100 4.100 14 C -0.081 4.081 15 C -0.207 4.207 16 C 0.095 3.905 17 O -0.326 6.326 18 C 0.031 3.969 19 C -0.153 4.153 20 C -0.086 4.086 21 H 0.056 0.944 22 H 0.041 0.959 23 H -0.005 1.005 24 H 0.312 0.688 25 H 0.256 0.744 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 1.978 11.988 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.279 5.279 3 C 0.146 3.854 4 H 0.061 0.939 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.121 4.121 8 N -0.486 5.486 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.102 4.102 14 C -0.099 4.099 15 C -0.226 4.226 16 C 0.051 3.949 17 O -0.240 6.240 18 C -0.064 4.064 19 C -0.171 4.171 20 C -0.105 4.105 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.014 0.986 24 H 0.129 0.871 25 H 0.066 0.934 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.929 1.992 11.164 11.503 hybrid contribution 0.927 -0.036 0.617 1.114 sum -1.002 1.956 11.781 11.984 Atomic orbital electron populations 1.22088 0.91690 0.98776 0.98909 1.61008 1.03725 1.16088 1.47108 1.18323 0.96590 0.85687 0.84765 0.93888 1.20827 0.91920 1.45129 0.98312 0.92853 1.24913 0.96070 0.94319 0.96822 1.70056 1.30010 1.39955 1.08565 0.86818 0.85631 0.78225 0.78082 1.20376 1.21391 1.20438 1.21482 0.95336 0.94016 0.99378 1.20805 0.97689 1.00096 0.91317 1.21131 1.07307 0.95897 0.98228 1.18887 0.99105 0.93269 0.83673 1.85996 1.79387 1.43527 1.15117 1.22926 0.98219 0.94835 0.90457 1.20335 1.05239 1.00023 0.91539 1.20955 0.98766 0.95894 0.94867 0.92484 0.93993 0.98621 0.87062 0.93419 0.85896 0.86452 0.93076 0.92972 0.88919 0.86219 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.49 60.06 0.63 1.37 16 2 N -0.65 -15.29 5.89 -116.49 -0.69 -15.97 16 3 C 0.25 6.23 2.08 -70.01 -0.15 6.09 16 4 H 0.04 1.15 7.67 -51.93 -0.40 0.75 16 5 C -0.52 -14.26 8.67 -34.44 -0.30 -14.56 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.09 2.36 5.39 -17.82 -0.10 2.26 16 8 N -0.85 -24.47 12.76 55.43 0.71 -23.77 16 9 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C -0.10 -2.12 4.52 -104.60 -0.47 -2.59 16 14 C -0.08 -1.56 8.97 -39.60 -0.36 -1.91 16 15 C -0.21 -3.53 9.04 -39.43 -0.36 -3.89 16 16 C 0.09 1.64 6.69 -39.21 -0.26 1.38 16 17 O -0.33 -5.03 10.50 -19.41 -0.20 -5.23 16 18 C 0.03 0.34 9.81 101.05 0.99 1.33 16 19 C -0.15 -2.69 9.99 -39.44 -0.39 -3.09 16 20 C -0.09 -1.67 9.66 -39.61 -0.38 -2.05 16 21 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.00 -0.09 7.87 -51.93 -0.41 -0.50 16 24 H 0.31 6.83 6.76 -39.29 -0.27 6.56 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.12 2.32 6.86 -52.48 -0.36 1.96 16 27 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 28 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 29 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 32 H 0.12 2.25 7.99 -52.48 -0.42 1.83 16 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -29.89 272.60 -6.45 -36.33 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.21 Total: 3.90 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.14 Total: -15.67 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.02 Total: -39.74 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.20 Total: -5.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.89 -6.45 -36.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259173214.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.009 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds