Wall clock time and date at job start Mon Mar 30 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00273 * 2 1 4 4 H 1.09003 * 109.46837 * 323.58338 * 3 2 1 5 5 C 1.50698 * 109.47312 * 203.57623 * 3 2 1 6 6 H 1.07993 * 120.00110 * 239.72345 * 5 3 2 7 7 C 1.37878 * 119.99590 * 60.00378 * 5 3 2 8 8 N 1.31512 * 120.00376 * 359.71817 * 7 5 3 9 9 Si 1.86802 * 119.99965 * 179.72349 * 7 5 3 10 10 H 1.48506 * 109.46915 * 59.99509 * 9 7 5 11 11 H 1.48492 * 109.47394 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47200 * 299.99771 * 9 7 5 13 13 C 1.50708 * 109.47197 * 83.57721 * 3 2 1 14 14 C 1.38266 * 119.94017 * 46.14609 * 13 3 2 15 15 C 1.38147 * 120.05103 * 179.72524 * 14 13 3 16 16 C 1.38738 * 119.94394 * 0.55103 * 15 14 13 17 17 O 1.35895 * 120.05363 * 179.75083 * 16 15 14 18 18 C 1.42899 * 117.00234 * 359.97438 * 17 16 15 19 19 C 1.38731 * 119.88562 * 359.72428 * 16 15 14 20 20 C 1.38137 * 119.94675 * 0.02562 * 19 16 15 21 21 H 1.09005 * 109.46857 * 64.62862 * 1 2 3 22 22 H 1.09001 * 109.47022 * 184.62958 * 1 2 3 23 23 H 1.09001 * 109.47279 * 304.62681 * 1 2 3 24 24 H 1.00902 * 110.99745 * 123.94976 * 2 1 3 25 25 H 0.97003 * 120.00378 * 180.02562 * 8 7 5 26 26 H 1.08003 * 119.97304 * 0.02562 * 14 13 3 27 27 H 1.07999 * 120.02724 * 180.27552 * 15 14 13 28 28 H 1.09006 * 109.47203 * 300.00026 * 18 17 16 29 29 H 1.08994 * 109.46992 * 60.00140 * 18 17 16 30 30 H 1.08996 * 109.47132 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.02323 * 179.97438 * 19 16 15 32 32 H 1.08006 * 119.97164 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3536 2.0070 -0.6101 5 6 3.3912 1.3737 -0.5683 6 1 4.2178 1.7254 0.0312 7 6 3.6120 0.9322 -1.8556 8 7 2.6055 0.5039 -2.5857 9 14 5.3410 0.9422 -2.5628 10 1 6.2205 0.0809 -1.7322 11 1 5.3101 0.4223 -3.9534 12 1 5.8670 2.3309 -2.5647 13 6 2.0272 1.8974 1.4120 14 6 2.5338 1.1110 2.4301 15 6 2.5691 1.5930 3.7243 16 6 2.0852 2.8628 4.0038 17 8 2.1143 3.3372 5.2769 18 6 2.6565 2.4743 6.2786 19 6 1.5722 3.6476 2.9813 20 6 1.5438 3.1630 1.6880 21 1 -0.3633 0.4404 -0.9286 22 1 -0.3633 -1.0243 0.0829 23 1 -0.3634 0.5839 0.8456 24 1 1.8305 -0.5261 0.7814 25 1 2.7609 0.1929 -3.4913 26 1 2.9066 0.1209 2.2126 27 1 2.9691 0.9801 4.5185 28 1 2.0718 1.5553 6.3218 29 1 3.6908 2.2356 6.0314 30 1 2.6199 2.9736 7.2468 31 1 1.1945 4.6363 3.1964 32 1 1.1449 3.7738 0.8916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259173214.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:40 Heat of formation + Delta-G solvation = -26.872733 kcal Electronic energy + Delta-G solvation = -14842.732641 eV Core-core repulsion = 12381.932581 eV Total energy + Delta-G solvation = -2460.800060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02764 -38.95140 -36.43662 -34.03373 -31.94219 -31.41923 -28.88146 -27.65549 -25.55375 -24.33938 -23.03236 -21.55008 -19.06114 -18.52359 -17.14192 -16.78070 -16.56724 -16.24219 -15.63001 -15.14128 -14.89820 -14.48578 -14.10704 -13.89821 -13.56934 -13.53246 -13.02819 -12.77469 -12.72592 -12.42753 -12.36076 -11.96420 -11.61327 -11.51727 -11.09911 -10.48336 -9.87373 -8.95646 -8.63590 -7.92691 -6.13403 0.47015 0.59978 1.46128 1.46639 1.54018 2.44091 2.49634 2.92943 3.27742 3.93762 4.01792 4.12333 4.30498 4.37624 4.42569 4.56971 4.62123 4.67785 4.74500 4.78547 4.84929 5.04661 5.13395 5.29359 5.38980 5.53197 5.80051 5.88593 5.92170 6.26520 6.53556 6.66645 7.01281 7.19437 7.57918 9.09719 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.007794 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.695447 B = 3591.490368 C = 3980.606991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.669 5.669 3 C 0.261 3.739 4 H 0.008 0.992 5 C -0.536 4.536 6 H 0.045 0.955 7 C 0.038 3.962 8 N -0.882 5.882 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 C -0.127 4.127 14 C -0.087 4.087 15 C -0.201 4.201 16 C 0.101 3.899 17 O -0.334 6.334 18 C 0.019 3.981 19 C -0.155 4.155 20 C -0.096 4.096 21 H 0.037 0.963 22 H 0.065 0.935 23 H 0.006 0.994 24 H 0.320 0.680 25 H 0.255 0.745 26 H 0.122 0.878 27 H 0.149 0.851 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 1.981 14.101 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.299 5.299 3 C 0.153 3.847 4 H 0.026 0.974 5 C -0.575 4.575 6 H 0.063 0.937 7 C -0.165 4.165 8 N -0.518 5.518 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.201 1.201 13 C -0.129 4.129 14 C -0.106 4.106 15 C -0.219 4.219 16 C 0.056 3.944 17 O -0.249 6.249 18 C -0.075 4.075 19 C -0.174 4.174 20 C -0.115 4.115 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.024 0.976 24 H 0.138 0.862 25 H 0.064 0.936 26 H 0.140 0.860 27 H 0.167 0.833 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.279 1.999 13.301 13.511 hybrid contribution 0.702 0.001 0.120 0.712 sum -0.577 2.000 13.421 13.581 Atomic orbital electron populations 1.21995 0.90082 1.00201 0.98292 1.60805 1.05411 1.15810 1.47876 1.17958 0.94509 0.85816 0.86409 0.97434 1.21138 0.93116 1.44622 0.98588 0.93705 1.25615 0.99526 0.94162 0.97238 1.70182 1.31795 1.41118 1.08705 0.85850 0.81402 0.78240 0.77358 1.19903 1.21069 1.20075 1.21178 0.98281 0.95379 0.98058 1.20828 0.97841 0.99951 0.91970 1.21372 1.06445 0.96193 0.97933 1.19008 0.97711 0.92996 0.84643 1.86003 1.79429 1.44759 1.14686 1.23312 0.98581 0.95298 0.90359 1.20528 1.04924 1.01040 0.90896 1.21000 0.99103 0.95414 0.95993 0.94392 0.91658 0.97591 0.86181 0.93622 0.86001 0.83295 0.91953 0.92208 0.85960 0.84115 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.84 10.49 127.69 1.34 3.18 16 2 N -0.67 -31.93 5.89 -522.46 -3.08 -35.00 16 3 C 0.26 13.18 2.08 43.42 0.09 13.27 16 4 H 0.01 0.43 7.67 -2.39 -0.02 0.42 16 5 C -0.54 -29.81 8.67 25.60 0.22 -29.59 16 6 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 7 C 0.04 2.13 5.39 84.66 0.46 2.58 16 8 N -0.88 -51.78 12.76 21.45 0.27 -51.51 16 9 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 C -0.13 -5.42 4.52 -19.85 -0.09 -5.51 16 14 C -0.09 -3.30 8.97 22.25 0.20 -3.10 16 15 C -0.20 -6.35 9.04 22.37 0.20 -6.15 16 16 C 0.10 3.24 6.69 22.51 0.15 3.39 16 17 O -0.33 -9.18 10.50 -92.37 -0.97 -10.15 16 18 C 0.02 0.33 9.81 113.37 1.11 1.45 16 19 C -0.16 -5.23 9.99 22.36 0.22 -5.01 16 20 C -0.10 -3.73 9.66 22.25 0.21 -3.52 16 21 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.01 0.22 7.87 -2.39 -0.02 0.21 16 24 H 0.32 14.07 6.76 -89.69 -0.61 13.47 16 25 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.12 4.53 6.86 -2.91 -0.02 4.51 16 27 H 0.15 3.68 6.30 -2.91 -0.02 3.66 16 28 H 0.06 0.99 7.66 -2.38 -0.02 0.98 16 29 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.12 4.61 7.99 -2.91 -0.02 4.59 16 Total: -1.00 -64.08 272.60 2.88 -61.20 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.50 Total: 18.27 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.12 Total: -29.01 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.80 Total: -86.51 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.97 Total: -10.15 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.08 2.88 -61.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259173214.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.326 kcal (2) G-P(sol) polarization free energy of solvation -64.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds