Wall clock time and date at job start Mon Mar 30 2020 02:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00183 * 2 1 4 4 H 1.09007 * 109.47036 * 33.91988 * 3 2 1 5 5 C 1.50692 * 109.47465 * 153.92460 * 3 2 1 6 6 H 1.08001 * 120.00172 * 119.99510 * 5 3 2 7 7 C 1.37880 * 120.00215 * 299.99977 * 5 3 2 8 8 N 1.31507 * 120.00340 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99897 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47003 * 89.99670 * 9 7 5 11 11 H 1.48496 * 109.47162 * 209.99949 * 9 7 5 12 12 H 1.48505 * 109.47027 * 330.00210 * 9 7 5 13 13 C 1.50704 * 109.46695 * 273.92755 * 3 2 1 14 14 C 1.38285 * 119.97265 * 314.48468 * 13 3 2 15 15 C 1.38241 * 120.11320 * 179.72656 * 14 13 3 16 16 C 1.38175 * 120.05227 * 0.55409 * 15 14 13 17 17 C 1.38707 * 119.94286 * 359.71938 * 16 15 14 18 18 O 1.35901 * 120.05412 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99856 * 0.03236 * 18 17 16 20 20 C 1.38126 * 119.97007 * 134.76309 * 13 3 2 21 21 H 1.08997 * 109.47459 * 65.01486 * 1 2 3 22 22 H 1.09000 * 109.47126 * 185.01763 * 1 2 3 23 23 H 1.09010 * 109.47287 * 305.01562 * 1 2 3 24 24 H 1.00903 * 111.00044 * 123.95039 * 2 1 3 25 25 H 0.96996 * 120.00381 * 179.97438 * 8 7 5 26 26 H 1.08003 * 119.94358 * 359.97438 * 14 13 3 27 27 H 1.07996 * 119.97396 * 180.25297 * 15 14 13 28 28 H 1.08004 * 120.02581 * 179.70519 * 16 15 14 29 29 H 1.09002 * 109.46768 * 299.99246 * 19 18 17 30 30 H 1.08997 * 109.47290 * 59.99594 * 19 18 17 31 31 H 1.09004 * 109.47190 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.03046 * 0.02562 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3295 2.0163 0.5735 5 6 3.3668 1.3831 0.6245 6 1 4.2180 1.7214 0.0522 7 6 3.5351 0.9618 1.9265 8 7 4.7320 0.9715 2.4713 9 14 2.0629 0.3772 2.9167 10 1 1.8887 -1.0854 2.7279 11 1 2.2874 0.6674 4.3556 12 1 0.8422 1.0849 2.4534 13 6 2.0846 1.8752 -1.4176 14 6 2.6199 1.0686 -2.4050 15 6 2.6979 1.5256 -3.7073 16 6 2.2514 2.7945 -4.0233 17 6 1.7192 3.6076 -3.0336 18 8 1.2798 4.8561 -3.3417 19 6 1.3956 5.2664 -4.7057 20 6 1.6368 3.1444 -1.7282 21 1 -0.3634 0.4340 -0.9314 22 1 -0.3633 -1.0237 0.0899 23 1 -0.3634 0.5897 0.8417 24 1 1.8306 -0.5261 0.7814 25 1 4.8503 0.6755 3.3874 26 1 2.9740 0.0783 -2.1591 27 1 3.1126 0.8922 -4.4775 28 1 2.3169 3.1529 -5.0400 29 1 2.4436 5.2427 -5.0044 30 1 0.8219 4.5894 -5.3387 31 1 1.0093 6.2799 -4.8143 32 1 1.2233 3.7758 -0.9558 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259278850.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:48 Heat of formation + Delta-G solvation = -4.368570 kcal Electronic energy + Delta-G solvation = -14942.019680 eV Core-core repulsion = 12482.195474 eV Total energy + Delta-G solvation = -2459.824207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62805 -37.46829 -35.32432 -32.28160 -30.77586 -29.70499 -27.39387 -26.92265 -23.68900 -22.71432 -21.86999 -19.86836 -17.17051 -16.86962 -15.83201 -15.55425 -15.42202 -15.25355 -13.97989 -13.68766 -13.47959 -13.07905 -12.90111 -12.66025 -12.22741 -12.11308 -11.42404 -11.27669 -11.09296 -10.96141 -10.59637 -10.54417 -10.09743 -9.83489 -9.41042 -8.78600 -8.09365 -7.62018 -7.53885 -6.22502 -4.24912 2.00563 2.13188 3.10673 3.20940 3.25059 3.61043 4.20975 4.45700 4.95374 5.13998 5.25658 5.34492 5.42765 5.51116 5.55503 5.88377 5.96858 6.05567 6.08176 6.17091 6.38939 6.40866 6.58011 6.74548 6.85900 7.13316 7.27933 7.43782 7.48488 7.89332 8.10669 8.20313 8.49005 8.84574 9.34325 10.89308 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037306 B = 0.008120 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.367391 B = 3447.543239 C = 3567.319879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.689 5.689 3 C 0.210 3.790 4 H 0.017 0.983 5 C -0.507 4.507 6 H 0.083 0.917 7 C 0.075 3.925 8 N -0.886 5.886 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.011 3.989 14 C -0.118 4.118 15 C -0.096 4.096 16 C -0.227 4.227 17 C 0.112 3.888 18 O -0.324 6.324 19 C 0.032 3.968 20 C -0.156 4.156 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.015 0.985 24 H 0.334 0.666 25 H 0.267 0.733 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 2.781 -10.450 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.326 5.326 3 C 0.104 3.896 4 H 0.034 0.966 5 C -0.546 4.546 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.524 5.524 9 Si 0.693 3.307 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.188 1.188 13 C 0.010 3.990 14 C -0.136 4.136 15 C -0.114 4.114 16 C -0.246 4.246 17 C 0.068 3.932 18 O -0.238 6.238 19 C -0.064 4.064 20 C -0.175 4.175 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.158 0.842 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.245 2.811 -10.819 13.321 hybrid contribution -0.751 -0.112 1.236 1.451 sum -7.996 2.699 -9.582 12.769 Atomic orbital electron populations 1.22299 0.90721 1.00086 1.00065 1.60940 1.05106 1.16920 1.49601 1.18672 0.96426 0.85671 0.88870 0.96567 1.21012 0.92224 1.43914 0.97442 0.89877 1.25017 0.95591 0.94978 0.97311 1.69855 1.21385 1.46546 1.14578 0.87181 0.83906 0.79546 0.80048 1.19866 1.21456 1.18762 1.19909 0.91386 0.91336 0.96351 1.20966 1.00261 1.00949 0.91467 1.20890 0.98882 0.94828 0.96773 1.20973 1.08664 0.96737 0.98256 1.18909 0.96322 0.83839 0.94098 1.86033 1.79625 1.29860 1.28246 1.22922 1.01308 1.00357 0.81811 1.20315 1.06564 0.97143 0.93465 0.92315 0.92868 0.96624 0.84250 0.92245 0.85243 0.86731 0.86670 0.93026 0.93163 0.88939 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.09 60.06 0.61 0.95 16 2 N -0.69 -15.23 5.72 -116.49 -0.67 -15.90 16 3 C 0.21 5.02 1.60 -70.02 -0.11 4.91 16 4 H 0.02 0.41 6.56 -51.93 -0.34 0.07 16 5 C -0.51 -14.06 9.19 -34.44 -0.32 -14.37 16 6 H 0.08 2.53 7.98 -52.49 -0.42 2.11 16 7 C 0.07 2.09 5.39 -17.82 -0.10 2.00 16 8 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 9 Si 0.86 20.62 24.43 -169.99 -4.15 16.47 16 10 H -0.27 -6.22 6.94 56.52 0.39 -5.83 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.26 -6.08 5.36 56.52 0.30 -5.77 16 13 C 0.01 0.24 4.76 -104.64 -0.50 -0.26 16 14 C -0.12 -2.38 9.27 -39.56 -0.37 -2.75 16 15 C -0.10 -1.64 10.04 -39.60 -0.40 -2.04 16 16 C -0.23 -3.76 9.04 -39.43 -0.36 -4.12 16 17 C 0.11 2.06 6.69 -39.22 -0.26 1.79 16 18 O -0.32 -5.32 10.50 -19.43 -0.20 -5.52 16 19 C 0.03 0.35 9.81 101.05 0.99 1.35 16 20 C -0.16 -3.18 9.61 -39.43 -0.38 -3.56 16 21 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.02 0.30 6.71 -51.92 -0.35 -0.05 16 24 H 0.33 7.73 4.64 -39.29 -0.18 7.55 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 26 H 0.13 2.67 7.89 -52.48 -0.41 2.26 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 29 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 2.42 8.00 -52.49 -0.42 2.00 16 LS Contribution 263.66 15.07 3.97 3.97 Total: -1.00 -29.95 263.66 -5.65 -35.60 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.18 Total: 7.04 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.19 Total: -16.10 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.11 Total: -41.46 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.20 Total: -5.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.15 Total: 16.47 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.95 -5.65 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259278850.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.231 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds