Wall clock time and date at job start Mon Mar 30 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30715 * 125.52152 * 269.69170 * 10 9 7 12 12 N 1.40454 * 106.78865 * 179.86404 * 11 10 9 13 13 H 0.96989 * 126.82042 * 180.15834 * 12 11 10 14 14 C 1.34429 * 106.35194 * 0.39815 * 12 11 10 15 15 C 1.50698 * 125.96009 * 179.74239 * 14 12 11 16 16 C 1.54268 * 110.03477 * 32.90299 * 15 14 12 17 17 C 1.54962 * 104.16004 * 217.14183 * 16 15 14 18 18 C 1.54887 * 102.77933 * 37.88683 * 17 16 15 19 19 C 1.53875 * 110.03033 * 275.68647 * 15 14 12 20 20 N 1.30840 * 108.07789 * 359.75687 * 14 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08993 * 110.01724 * 154.29977 * 15 14 12 25 25 H 1.09004 * 110.48373 * 335.79015 * 16 15 14 26 26 H 1.08998 * 110.48517 * 98.42785 * 16 15 14 27 27 H 1.09005 * 110.71503 * 279.56881 * 17 16 15 28 28 H 1.09000 * 110.76478 * 156.22449 * 17 16 15 29 29 H 1.09007 * 110.48427 * 203.40874 * 18 17 16 30 30 H 1.08994 * 110.60055 * 80.82151 * 18 17 16 31 31 H 1.09001 * 110.03273 * 238.56789 * 19 15 14 32 32 H 1.08999 * 110.03146 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 7 4.2679 -3.3270 1.0771 12 7 4.7078 -4.5838 0.6303 13 1 4.9721 -5.3368 1.1816 14 6 4.6948 -4.5339 -0.7130 15 6 5.0930 -5.6500 -1.6439 16 6 4.7383 -7.0138 -1.0161 17 6 5.9068 -7.9403 -1.4371 18 6 7.1373 -7.0043 -1.3430 19 6 6.6176 -5.6440 -1.8521 20 7 4.2764 -3.3470 -1.0711 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 4.5850 -5.5363 -2.6015 25 1 4.6883 -6.9324 0.0697 26 1 3.7940 -7.3836 -1.4157 27 1 5.7687 -8.2954 -2.4584 28 1 6.0045 -8.7775 -0.7459 29 1 7.9429 -7.3679 -1.9809 30 1 7.4775 -6.9207 -0.3108 31 1 6.8494 -5.5283 -2.9109 32 1 7.0694 -4.8341 -1.2795 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259288175.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:47 Heat of formation + Delta-G solvation = 39.306435 kcal Electronic energy + Delta-G solvation = -14590.884256 eV Core-core repulsion = 12165.246691 eV Total energy + Delta-G solvation = -2425.637565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.15425 -38.99408 -35.57355 -33.84211 -32.95801 -31.01473 -29.65113 -28.98943 -25.37895 -23.44636 -21.69600 -21.04446 -20.71495 -19.08157 -18.83209 -17.06925 -16.48899 -16.29232 -15.95829 -15.08777 -14.89685 -14.31011 -14.16691 -13.81763 -13.12499 -12.88368 -12.58409 -12.54931 -12.34353 -12.03529 -11.95575 -11.94946 -11.72436 -11.65204 -11.42334 -11.01334 -10.93454 -10.79674 -10.31914 -8.32547 -6.39871 0.66102 1.39277 1.42140 1.53918 1.76061 1.96007 2.35957 2.98154 3.04942 3.51342 3.66819 3.80091 4.01444 4.23677 4.44138 4.48299 4.54744 4.66930 4.78898 4.84606 4.92532 5.07531 5.09704 5.22106 5.25318 5.32494 5.35173 5.40451 5.47866 5.53269 6.17449 6.26557 6.60840 7.21790 7.22454 8.84668 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.061307 B = 0.005831 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.610918 B = 4800.413284 C = 4908.890347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.523 4.523 8 H 0.017 0.983 9 C 0.076 3.924 10 C 0.251 3.749 11 N -0.352 5.352 12 N -0.478 5.478 13 H 0.449 0.551 14 C 0.292 3.708 15 C -0.015 4.015 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.112 4.112 20 N -0.574 5.574 21 H 0.271 0.729 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.185 -15.358 -3.266 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.167 1.167 7 C -0.562 4.562 8 H 0.036 0.964 9 C 0.036 3.964 10 C -0.031 4.031 11 N -0.181 5.181 12 N -0.198 5.198 13 H 0.297 0.703 14 C 0.013 3.987 15 C -0.036 4.036 16 C -0.161 4.161 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.150 4.150 20 N -0.304 5.304 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.887 -14.819 -2.860 21.913 hybrid contribution -0.337 0.315 0.428 0.629 sum 15.550 -14.504 -2.432 21.402 Atomic orbital electron populations 1.70043 1.08384 1.28654 1.51518 1.25958 0.95743 1.03483 0.93275 0.85562 0.79465 0.77334 0.79759 1.18397 1.20182 1.16744 1.20836 0.89947 0.93150 1.52290 0.96413 1.17992 0.94703 0.84854 0.98837 1.24504 0.94463 0.98718 0.85393 1.77914 1.24850 0.92487 1.22839 1.47789 1.52599 1.12953 1.06452 0.70261 1.25009 0.94097 0.95062 0.84503 1.20739 0.98623 0.88286 0.95956 1.22568 1.00849 0.92432 1.00227 1.22499 0.92443 0.97215 1.02913 1.22406 0.98410 0.93209 1.01783 1.22200 0.91000 0.98847 1.02994 1.70333 1.23690 1.04219 1.32122 0.91977 0.93090 0.93366 0.87517 0.91771 0.90131 0.89804 0.89554 0.89460 0.91408 0.89304 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.96 44.94 27.47 68.60 1.88 46.82 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.52 -32.68 9.65 25.60 0.25 -32.44 16 8 H 0.02 1.24 7.98 -2.91 -0.02 1.22 16 9 C 0.08 4.03 4.67 29.10 0.14 4.16 16 10 C 0.25 12.52 7.33 138.63 1.02 13.53 16 11 N -0.35 -16.03 12.80 -51.34 -0.66 -16.69 16 12 N -0.48 -16.15 7.09 -50.70 -0.36 -16.51 16 13 H 0.45 10.92 7.72 -213.10 -1.65 9.27 16 14 C 0.29 9.99 6.76 138.22 0.93 10.93 16 15 C -0.01 -0.33 3.44 -10.82 -0.04 -0.37 16 16 C -0.12 -1.99 6.36 31.70 0.20 -1.79 16 17 C -0.11 -1.20 6.91 31.91 0.22 -0.98 16 18 C -0.12 -1.41 6.83 31.67 0.22 -1.20 16 19 C -0.11 -1.98 6.45 31.32 0.20 -1.77 16 20 N -0.57 -26.01 11.19 -179.73 -2.01 -28.02 16 21 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 22 H 0.05 2.58 7.58 -2.38 -0.02 2.56 16 23 H 0.05 2.45 7.19 -2.39 -0.02 2.44 16 24 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.06 1.03 6.38 -2.38 -0.02 1.01 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.07 7.67 -2.39 -0.02 1.05 16 Total: -1.00 -77.75 266.92 2.18 -75.58 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -0.58 Total: 8.24 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 3.60 Total: -8.67 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -2.73 Total: -121.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -77.75 2.18 -75.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259288175.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.883 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds