Wall clock time and date at job start Mon Mar 30 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38822 * 119.99273 * 2 1 4 4 C 1.38558 * 118.03953 * 180.02562 * 3 2 1 5 5 C 1.39478 * 117.90427 * 0.02562 * 4 3 2 6 6 N 1.39049 * 120.15847 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99981 * 4.97211 * 6 5 4 8 8 C 1.46501 * 120.00123 * 184.97838 * 6 5 4 9 9 C 1.53004 * 109.47223 * 89.99287 * 8 6 5 10 10 C 1.50697 * 109.47185 * 179.97438 * 9 8 6 11 11 H 1.08010 * 119.99965 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99955 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00302 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99758 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47346 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47200 * 120.00387 * 14 12 10 17 17 H 1.48504 * 109.47280 * 240.00147 * 14 12 10 18 18 N 1.32489 * 119.68618 * 359.97438 * 5 4 3 19 19 N 1.28354 * 122.06974 * 359.97438 * 18 5 4 20 20 H 1.09007 * 109.46863 * 270.00103 * 1 2 3 21 21 H 1.09001 * 109.47360 * 29.99817 * 1 2 3 22 22 H 1.08997 * 109.47491 * 150.00014 * 1 2 3 23 23 H 1.08001 * 120.98051 * 0.02562 * 3 2 1 24 24 H 1.07997 * 121.04719 * 180.02562 * 4 3 2 25 25 H 1.09008 * 109.46927 * 90.00469 * 7 6 5 26 26 H 1.08996 * 109.47547 * 209.99927 * 7 6 5 27 27 H 1.08996 * 109.47535 * 330.00752 * 7 6 5 28 28 H 1.08994 * 109.47370 * 209.99715 * 8 6 5 29 29 H 1.09001 * 109.46852 * 329.99736 * 8 6 5 30 30 H 1.08994 * 109.47298 * 300.00473 * 9 8 6 31 31 H 1.09008 * 109.46584 * 60.00166 * 9 8 6 32 32 H 0.96993 * 120.00022 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1551 -0.0005 5 6 4.1961 -0.0990 -0.0016 6 7 5.5828 -0.2011 -0.0017 7 6 6.4061 1.0056 0.1094 8 6 6.2207 -1.5152 -0.1129 9 6 6.4518 -1.8468 -1.5886 10 6 7.1085 -3.1983 -1.7030 11 1 7.3376 -3.7645 -0.8121 12 6 7.4167 -3.7121 -2.9447 13 7 7.1381 -3.0226 -4.0294 14 14 8.2300 -5.3878 -3.0864 15 1 8.4366 -5.9541 -1.7293 16 1 7.3589 -6.2958 -3.8750 17 1 9.5418 -5.2453 -3.7677 18 7 3.4483 -1.1927 -0.0016 19 7 2.1658 -1.1414 -0.0001 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6769 2.1467 0.0004 24 1 4.1739 2.0608 -0.0002 25 1 6.6037 1.2151 1.1607 26 1 7.3497 0.8512 -0.4139 27 1 5.8774 1.8484 -0.3358 28 1 7.1767 -1.5006 0.4103 29 1 5.5744 -2.2716 0.3325 30 1 5.4957 -1.8614 -2.1118 31 1 7.0981 -1.0903 -2.0339 32 1 7.3553 -3.3839 -4.9029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259295111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:04 Heat of formation + Delta-G solvation = 57.323115 kcal Electronic energy + Delta-G solvation = -14563.958129 eV Core-core repulsion = 12139.101826 eV Total energy + Delta-G solvation = -2424.856303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58917 -36.96973 -33.32876 -33.28039 -31.90231 -29.79209 -28.17158 -25.95398 -24.69626 -23.33354 -21.84564 -20.46340 -17.12327 -17.08581 -16.22508 -15.23249 -15.05571 -14.46586 -14.25244 -13.84221 -13.64594 -13.02030 -12.64556 -12.50311 -12.29859 -12.17630 -11.71117 -11.35893 -10.91964 -10.77313 -10.60941 -10.24098 -9.90762 -9.84799 -9.46659 -9.19039 -9.01804 -8.33391 -7.24226 -5.98335 -4.01166 1.20929 1.56487 3.28531 3.33721 3.41335 3.45964 4.03718 4.48210 4.58692 4.83586 4.92335 4.98398 5.29142 5.38064 5.40045 5.54190 5.61472 5.64903 5.85299 5.91716 5.95100 6.09748 6.34503 6.46904 6.62655 6.90460 7.40712 7.50612 7.74114 7.88848 8.03930 8.41119 9.05617 9.35191 9.62710 11.13245 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.006573 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.304356 B = 4258.514042 C = 4723.336698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.011 4.011 3 C -0.080 4.080 4 C -0.190 4.190 5 C 0.346 3.654 6 N -0.595 5.595 7 C 0.093 3.907 8 C 0.124 3.876 9 C 0.014 3.986 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.285 1.285 18 N -0.291 5.291 19 N -0.200 5.200 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.140 0.860 24 H 0.142 0.858 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.020 0.980 31 H 0.013 0.987 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 11.240 8.502 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 C -0.109 4.109 4 C -0.224 4.224 5 C 0.105 3.895 6 N -0.306 5.306 7 C -0.051 4.051 8 C 0.003 3.997 9 C -0.025 4.025 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 N -0.143 5.143 19 N -0.043 5.043 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.158 0.842 24 H 0.160 0.840 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.031 0.969 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.467 9.565 8.324 14.715 hybrid contribution 0.633 0.815 -0.348 1.089 sum -6.834 10.380 7.976 14.767 Atomic orbital electron populations 1.20443 0.88362 1.03121 1.02477 1.22468 0.98480 0.90669 1.04479 1.21930 0.93723 0.99266 0.95971 1.21827 0.95459 0.97829 1.07299 1.20110 0.87345 0.91134 0.90926 1.46755 1.00251 1.08739 1.74864 1.21705 0.95835 0.86782 1.00771 1.21938 0.95893 0.80753 1.01093 1.19401 0.97256 0.96389 0.89409 1.21132 1.39303 1.02723 0.92463 0.92412 1.24999 0.95888 0.97584 0.95849 1.69985 1.47830 1.37896 0.97701 0.86503 0.78957 0.84175 0.78175 1.19622 1.20952 1.21091 1.73128 0.98690 1.24384 1.18081 1.72729 1.00907 1.24770 1.05929 0.91101 0.91263 0.90644 0.84201 0.84018 0.93266 0.90301 0.91833 0.91957 0.90335 0.96116 0.96882 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.19 36.01 0.37 -0.54 16 2 C -0.01 -0.17 6.87 -82.40 -0.57 -0.74 16 3 C -0.08 -1.04 9.86 -39.25 -0.39 -1.43 16 4 C -0.19 -2.78 9.35 -39.00 -0.36 -3.14 16 5 C 0.35 6.51 7.45 -154.77 -1.15 5.36 16 6 N -0.59 -11.01 2.99 -181.57 -0.54 -11.56 16 7 C 0.09 1.27 10.30 59.84 0.62 1.88 16 8 C 0.12 2.69 5.42 -4.04 -0.02 2.67 16 9 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 11 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 N -0.29 -6.23 10.27 31.23 0.32 -5.91 16 19 N -0.20 -3.90 11.41 33.61 0.38 -3.51 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 24 H 0.14 1.61 6.14 -52.49 -0.32 1.28 16 25 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 27 H 0.06 0.73 6.03 -51.93 -0.31 0.41 16 28 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.08 1.80 7.32 -51.93 -0.38 1.42 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -33.96 276.67 -6.37 -40.33 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -4.35 Total: -4.36 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.07 Total: -9.38 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.90 Total: -47.84 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.96 -6.37 -40.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259295111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.653 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds