Wall clock time and date at job start Mon Mar 30 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38822 * 119.99273 * 2 1 4 4 C 1.38558 * 118.03953 * 180.02562 * 3 2 1 5 5 C 1.39478 * 117.90427 * 0.02562 * 4 3 2 6 6 N 1.39049 * 120.15847 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99981 * 4.97211 * 6 5 4 8 8 C 1.46501 * 120.00123 * 184.97838 * 6 5 4 9 9 C 1.53004 * 109.47223 * 89.99287 * 8 6 5 10 10 C 1.50697 * 109.47185 * 179.97438 * 9 8 6 11 11 H 1.08010 * 119.99965 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99955 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00302 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99758 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47346 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47200 * 120.00387 * 14 12 10 17 17 H 1.48504 * 109.47280 * 240.00147 * 14 12 10 18 18 N 1.32489 * 119.68618 * 359.97438 * 5 4 3 19 19 N 1.28354 * 122.06974 * 359.97438 * 18 5 4 20 20 H 1.09007 * 109.46863 * 270.00103 * 1 2 3 21 21 H 1.09001 * 109.47360 * 29.99817 * 1 2 3 22 22 H 1.08997 * 109.47491 * 150.00014 * 1 2 3 23 23 H 1.08001 * 120.98051 * 0.02562 * 3 2 1 24 24 H 1.07997 * 121.04719 * 180.02562 * 4 3 2 25 25 H 1.09008 * 109.46927 * 90.00469 * 7 6 5 26 26 H 1.08996 * 109.47547 * 209.99927 * 7 6 5 27 27 H 1.08996 * 109.47535 * 330.00752 * 7 6 5 28 28 H 1.08994 * 109.47370 * 209.99715 * 8 6 5 29 29 H 1.09001 * 109.46852 * 329.99736 * 8 6 5 30 30 H 1.08994 * 109.47298 * 300.00473 * 9 8 6 31 31 H 1.09008 * 109.46584 * 60.00166 * 9 8 6 32 32 H 0.96993 * 120.00022 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1551 -0.0005 5 6 4.1961 -0.0990 -0.0016 6 7 5.5828 -0.2011 -0.0017 7 6 6.4061 1.0056 0.1094 8 6 6.2207 -1.5152 -0.1129 9 6 6.4518 -1.8468 -1.5886 10 6 7.1085 -3.1983 -1.7030 11 1 7.3376 -3.7645 -0.8121 12 6 7.4167 -3.7121 -2.9447 13 7 7.1381 -3.0226 -4.0294 14 14 8.2300 -5.3878 -3.0864 15 1 8.4366 -5.9541 -1.7293 16 1 7.3589 -6.2958 -3.8750 17 1 9.5418 -5.2453 -3.7677 18 7 3.4483 -1.1927 -0.0016 19 7 2.1658 -1.1414 -0.0001 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6769 2.1467 0.0004 24 1 4.1739 2.0608 -0.0002 25 1 6.6037 1.2151 1.1607 26 1 7.3497 0.8512 -0.4139 27 1 5.8774 1.8484 -0.3358 28 1 7.1767 -1.5006 0.4103 29 1 5.5744 -2.2716 0.3325 30 1 5.4957 -1.8614 -2.1118 31 1 7.0981 -1.0903 -2.0339 32 1 7.3553 -3.3839 -4.9029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259295111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:03 Heat of formation + Delta-G solvation = 34.759259 kcal Electronic energy + Delta-G solvation = -14564.936571 eV Core-core repulsion = 12139.101826 eV Total energy + Delta-G solvation = -2425.834745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84468 -38.37161 -35.36076 -34.47578 -33.37012 -31.55010 -29.27423 -27.60281 -26.09340 -24.84682 -23.27898 -22.10996 -18.81720 -18.34712 -18.08058 -16.65983 -16.33943 -16.23471 -15.61824 -15.11907 -14.89516 -14.36798 -14.23708 -14.01645 -13.58415 -13.35436 -13.09443 -12.90096 -12.80154 -12.53042 -11.98500 -11.91075 -11.84664 -11.34584 -11.25687 -10.89417 -10.59995 -10.29707 -8.64745 -8.22515 -6.35479 0.05262 0.36248 1.37863 1.39867 1.53128 1.99277 2.40559 2.78643 3.10242 3.43166 3.75971 3.82570 3.92380 4.27541 4.29992 4.43242 4.54316 4.66140 4.80004 4.80950 4.87944 4.88869 4.96983 5.09563 5.22470 5.40377 5.48637 5.57487 5.74119 6.04609 6.28335 6.35202 6.81348 7.34026 8.08342 8.89138 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.006573 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.304356 B = 4258.514042 C = 4723.336698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.008 4.008 3 C -0.069 4.069 4 C -0.182 4.182 5 C 0.319 3.681 6 N -0.608 5.608 7 C 0.089 3.911 8 C 0.144 3.856 9 C 0.028 3.972 10 C -0.540 4.540 11 H 0.064 0.936 12 C -0.001 4.001 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.259 1.259 16 H -0.281 1.281 17 H -0.273 1.273 18 N -0.354 5.354 19 N -0.254 5.254 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.064 0.936 23 H 0.196 0.804 24 H 0.180 0.820 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.057 0.943 30 H -0.026 1.026 31 H -0.006 1.006 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 12.969 9.409 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.097 4.097 4 C -0.215 4.215 5 C 0.077 3.923 6 N -0.321 5.321 7 C -0.053 4.053 8 C 0.022 3.978 9 C -0.010 4.010 10 C -0.578 4.578 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.794 3.206 15 H -0.183 1.183 16 H -0.207 1.207 17 H -0.198 1.198 18 N -0.204 5.204 19 N -0.095 5.095 20 H 0.108 0.892 21 H 0.123 0.877 22 H 0.083 0.917 23 H 0.213 0.787 24 H 0.197 0.803 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.076 0.924 30 H -0.008 1.008 31 H 0.012 0.988 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.981 11.298 9.253 16.642 hybrid contribution 0.631 0.401 -0.635 0.980 sum -7.350 11.699 8.618 16.283 Atomic orbital electron populations 1.20613 0.85223 1.04345 1.04063 1.23324 1.00623 0.90538 1.01540 1.22548 0.93173 1.00606 0.93390 1.22280 0.96590 0.97268 1.05397 1.20487 0.87350 0.92509 0.91964 1.46712 1.00759 1.08587 1.76030 1.21955 0.95092 0.85591 1.02656 1.21372 0.96494 0.82782 0.97192 1.19187 0.93989 0.95419 0.92432 1.21591 1.39424 1.03824 0.93006 0.91769 1.26013 0.96409 1.02029 0.95370 1.70124 1.48999 1.40078 0.98382 0.85328 0.78003 0.78577 0.78708 1.18290 1.20716 1.19839 1.72931 0.99992 1.26833 1.20614 1.72611 1.00573 1.27514 1.08764 0.89174 0.87746 0.91709 0.78719 0.80277 0.90611 0.91133 0.89295 0.90166 0.92414 1.00802 0.98774 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.19 71.24 0.73 -0.83 16 2 C -0.01 -0.24 6.87 42.71 0.29 0.05 16 3 C -0.07 -1.55 9.86 22.49 0.22 -1.32 16 4 C -0.18 -4.86 9.35 22.65 0.21 -4.64 16 5 C 0.32 12.07 7.45 133.10 0.99 13.06 16 6 N -0.61 -22.70 2.99 -728.36 -2.18 -24.88 16 7 C 0.09 2.28 10.30 127.77 1.32 3.60 16 8 C 0.14 6.50 5.42 86.38 0.47 6.97 16 9 C 0.03 1.58 5.30 29.85 0.16 1.74 16 10 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 11 H 0.06 3.64 7.74 -2.91 -0.02 3.62 16 12 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 13 N -0.94 -59.39 13.29 21.45 0.28 -59.10 16 14 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 15 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 18 N -0.35 -15.86 10.27 -55.10 -0.57 -16.42 16 19 N -0.25 -10.18 11.41 -47.57 -0.54 -10.72 16 20 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 21 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 24 H 0.18 3.25 6.14 -2.91 -0.02 3.24 16 25 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 27 H 0.09 1.78 6.03 -2.39 -0.01 1.76 16 28 H 0.08 3.25 8.07 -2.39 -0.02 3.23 16 29 H 0.06 2.81 7.32 -2.39 -0.02 2.79 16 30 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 31 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 32 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -79.51 276.67 5.21 -74.30 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.10 Total: 1.77 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.08 Total: -12.87 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -3.00 Total: -111.13 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.51 5.21 -74.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259295111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.060 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds