Wall clock time and date at job start Mon Mar 30 2020 03:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38125 * 120.40146 * 2 1 4 4 C 1.39622 * 118.33398 * 179.72574 * 3 2 1 5 5 N 1.38549 * 120.52905 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99805 * 5.00630 * 5 4 3 7 7 C 1.46488 * 119.99950 * 184.99714 * 5 4 3 8 8 C 1.53002 * 109.46910 * 90.00716 * 7 5 4 9 9 C 1.50702 * 109.47229 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00197 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99658 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00196 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47044 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47077 * 120.00116 * 13 11 9 16 16 H 1.48499 * 109.46902 * 240.00165 * 13 11 9 17 17 N 1.32986 * 118.93795 * 0.02562 * 4 3 2 18 18 C 1.31752 * 120.68870 * 359.97438 * 17 4 3 19 19 N 1.31783 * 121.83271 * 359.97438 * 18 17 4 20 20 H 1.08997 * 109.47005 * 90.00187 * 1 2 3 21 21 H 1.08997 * 109.46543 * 209.99808 * 1 2 3 22 22 H 1.09004 * 109.47136 * 329.99746 * 1 2 3 23 23 H 1.07997 * 120.83075 * 359.74727 * 3 2 1 24 24 H 1.08998 * 109.47174 * 89.99389 * 6 5 4 25 25 H 1.09005 * 109.46663 * 209.99746 * 6 5 4 26 26 H 1.09001 * 109.47023 * 329.99212 * 6 5 4 27 27 H 1.09004 * 109.47371 * 210.00175 * 7 5 4 28 28 H 1.08996 * 109.47700 * 330.00776 * 7 5 4 29 29 H 1.09009 * 109.47225 * 299.99469 * 8 7 5 30 30 H 1.08993 * 109.47605 * 59.99711 * 8 7 5 31 31 H 0.97002 * 119.99968 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.08421 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1410 0.0059 5 7 4.3476 2.3082 0.0067 6 6 3.6769 3.6064 0.1120 7 6 5.8074 2.2442 -0.0977 8 6 6.2157 2.2870 -1.5716 9 6 7.7174 2.2218 -1.6790 10 1 8.3204 2.1568 -0.7854 11 6 8.3217 2.2451 -2.9181 12 7 7.5874 2.3247 -4.0063 13 14 10.1831 2.1636 -3.0512 14 1 10.7734 2.0787 -1.6912 15 1 10.5713 0.9631 -3.8346 16 1 10.6844 3.3834 -3.7338 17 7 4.2023 -0.0453 0.0107 18 6 3.4956 -1.1572 0.0105 19 7 2.1778 -1.1432 0.0060 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6862 2.1380 -0.0041 24 1 3.5818 3.8821 1.1623 25 1 4.2639 4.3620 -0.4103 26 1 2.6862 3.5411 -0.3377 27 1 6.2467 3.0935 0.4258 28 1 6.1635 1.3170 0.3512 29 1 5.7765 1.4377 -2.0951 30 1 5.8596 3.2141 -2.0205 31 1 8.0125 2.3415 -4.8781 32 1 4.0105 -2.1065 0.0149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259373672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:54 Heat of formation + Delta-G solvation = 25.388675 kcal Electronic energy + Delta-G solvation = -14591.610435 eV Core-core repulsion = 12165.369351 eV Total energy + Delta-G solvation = -2426.241084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.82108 -38.38336 -35.34857 -34.87621 -32.94244 -31.55485 -29.09253 -28.12738 -26.26883 -24.46719 -23.52680 -21.57284 -18.82485 -18.22735 -18.13976 -16.64557 -16.34525 -16.14659 -15.74334 -15.47863 -14.93444 -14.47386 -14.25075 -13.81386 -13.69939 -13.35090 -13.19738 -12.93100 -12.86324 -12.55136 -12.06045 -11.89177 -11.50456 -11.45884 -11.32037 -10.60019 -10.57823 -10.05395 -8.78904 -8.22665 -6.35407 0.19637 0.48168 1.38996 1.40278 1.53643 1.98066 2.40701 3.01070 3.10685 3.35103 3.44924 3.81225 4.23209 4.28006 4.35945 4.46772 4.54026 4.69939 4.78924 4.82033 4.86627 4.94563 4.96390 5.12732 5.40489 5.45131 5.60094 5.72160 5.87126 6.13170 6.34098 6.55790 6.81700 7.34364 7.43631 8.89190 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041731 B = 0.006300 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.801197 B = 4443.245122 C = 4716.872028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.186 3.814 3 C -0.302 4.302 4 C 0.418 3.582 5 N -0.603 5.603 6 C 0.088 3.912 7 C 0.143 3.857 8 C 0.029 3.971 9 C -0.539 4.539 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.258 1.258 15 H -0.281 1.281 16 H -0.276 1.276 17 N -0.610 5.610 18 C 0.327 3.673 19 N -0.586 5.586 20 H 0.092 0.908 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.167 0.833 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.064 0.936 29 H -0.024 1.024 30 H -0.009 1.009 31 H 0.263 0.737 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 -0.082 9.370 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 C -0.330 4.330 4 C 0.176 3.824 5 N -0.313 5.313 6 C -0.054 4.054 7 C 0.020 3.980 8 C -0.010 4.010 9 C -0.577 4.577 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.182 1.182 15 H -0.207 1.207 16 H -0.201 1.201 17 N -0.335 5.335 18 C 0.038 3.962 19 N -0.308 5.308 20 H 0.110 0.890 21 H 0.102 0.898 22 H 0.120 0.880 23 H 0.184 0.816 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.083 0.917 29 H -0.005 1.005 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.966 -0.675 9.221 15.122 hybrid contribution 0.833 0.635 -0.670 1.244 sum -11.132 -0.040 8.551 14.038 Atomic orbital electron populations 1.20818 0.85195 1.04960 1.04358 1.22058 0.99015 0.87287 0.87223 1.22222 0.92416 1.02138 1.16228 1.19011 0.89324 0.86864 0.87211 1.46853 1.06470 1.03605 1.74398 1.21964 0.98506 0.82178 1.02767 1.21415 0.77539 1.01689 0.97312 1.19180 0.95294 0.94147 0.92344 1.21577 0.92750 1.50419 0.92973 0.91662 1.26002 1.03865 0.94507 0.95369 1.70131 1.37545 1.51548 0.98364 0.85334 0.78850 0.77744 0.78723 1.18214 1.20681 1.20109 1.68002 1.42845 0.98905 1.23776 1.25049 0.87054 0.96147 0.87980 1.68317 1.09828 1.30735 1.21878 0.88964 0.89751 0.88044 0.81587 0.90472 0.90974 0.89514 0.90330 0.91715 1.00523 0.99101 0.92809 0.77345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 10.21 71.23 0.73 -0.93 16 2 C 0.19 5.18 6.82 42.42 0.29 5.47 16 3 C -0.30 -8.86 9.01 22.58 0.20 -8.65 16 4 C 0.42 15.56 7.39 133.16 0.98 16.54 16 5 N -0.60 -22.09 2.98 -728.29 -2.17 -24.26 16 6 C 0.09 2.28 10.31 127.77 1.32 3.60 16 7 C 0.14 6.19 5.42 86.38 0.47 6.65 16 8 C 0.03 1.56 5.30 29.85 0.16 1.72 16 9 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 10 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 11 C 0.00 0.01 5.46 84.65 0.46 0.47 16 12 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 13 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 14 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 17 N -0.61 -24.57 9.23 -197.62 -1.82 -26.39 16 18 C 0.33 11.23 12.28 180.90 2.22 13.45 16 19 N -0.59 -18.77 10.37 -188.34 -1.95 -20.73 16 20 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.10 1.22 8.09 -2.38 -0.02 1.20 16 23 H 0.17 3.66 6.16 -2.91 -0.02 3.65 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.95 8.07 -2.38 -0.02 1.93 16 26 H 0.09 1.87 6.05 -2.39 -0.01 1.85 16 27 H 0.08 3.08 8.07 -2.39 -0.02 3.06 16 28 H 0.06 2.96 7.33 -2.39 -0.02 2.94 16 29 H -0.02 -1.49 8.14 -2.38 -0.02 -1.51 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.21 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -73.09 276.61 4.53 -68.57 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.10 Total: 6.59 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 7.06 Total: 7.43 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.66 Total: -129.39 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -73.09 4.53 -68.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259373672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.954 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds