Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38627 * 120.39756 * 2 1 4 4 C 1.38587 * 118.55913 * 179.97438 * 3 2 1 5 5 N 1.32293 * 119.19423 * 359.97438 * 4 3 2 6 6 C 1.32479 * 120.74171 * 0.02562 * 5 4 3 7 7 N 1.38413 * 119.21653 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99921 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99876 * 0.02562 * 7 6 5 10 10 C 1.52997 * 109.47029 * 89.99527 * 9 7 6 11 11 C 1.50695 * 109.47172 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00141 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00010 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99946 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47170 * 89.99547 * 15 13 11 17 17 H 1.48496 * 109.47081 * 209.99779 * 15 13 11 18 18 H 1.48499 * 109.47028 * 329.99646 * 15 13 11 19 19 N 1.32258 * 120.40243 * 179.71737 * 2 1 3 20 20 H 1.08999 * 109.47015 * 90.00471 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99623 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00341 * 1 2 3 23 23 H 1.08002 * 120.72588 * 359.95309 * 3 2 1 24 24 H 1.07995 * 120.39993 * 179.97438 * 4 3 2 25 25 H 1.08997 * 109.46855 * 90.00257 * 8 7 6 26 26 H 1.08997 * 109.47078 * 210.00043 * 8 7 6 27 27 H 1.08999 * 109.47275 * 330.00425 * 8 7 6 28 28 H 1.08992 * 109.46872 * 209.99985 * 9 7 6 29 29 H 1.09005 * 109.47085 * 330.00052 * 9 7 6 30 30 H 1.09003 * 109.47258 * 300.00169 * 10 9 7 31 31 H 1.09010 * 109.47196 * 60.00159 * 10 9 7 32 32 H 0.97000 * 119.99484 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1957 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0237 0.0016 6 6 3.5015 -1.1484 0.0015 7 7 4.1700 -2.3604 0.0021 8 6 3.4128 -3.6146 0.0027 9 6 5.6347 -2.3890 0.0032 10 6 6.1435 -2.3988 1.4461 11 6 7.6501 -2.4288 1.4473 12 1 8.1907 -2.4402 0.5124 13 6 8.3384 -2.4428 2.6419 14 7 7.6801 -2.4294 3.7804 15 14 10.2061 -2.4793 2.6434 16 1 10.7284 -1.0892 2.6443 17 1 10.6864 -3.1893 3.8559 18 1 10.6883 -3.1884 1.4310 19 7 2.1764 -1.1407 0.0056 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6869 2.1414 -0.0008 24 1 4.1698 2.0647 0.0001 25 1 3.2251 -3.9260 -1.0249 26 1 3.9869 -4.3853 0.5168 27 1 2.4631 -3.4654 0.5163 28 1 5.9810 -3.2858 -0.5103 29 1 6.0158 -1.5062 -0.5103 30 1 5.7971 -1.5018 1.9596 31 1 5.7624 -3.2815 1.9598 32 1 8.1644 -2.4389 4.6207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259373828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = 50.724549 kcal Electronic energy + Delta-G solvation = -14618.334549 eV Core-core repulsion = 12193.192110 eV Total energy + Delta-G solvation = -2425.142439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.53375 -36.62314 -33.88280 -33.15847 -31.48859 -29.63409 -28.35353 -26.23033 -24.70150 -22.70573 -22.01059 -20.09355 -17.26671 -16.82336 -16.15593 -15.14544 -15.06430 -14.44437 -14.08253 -13.91446 -13.56786 -12.91512 -12.66733 -12.45681 -12.25487 -12.22572 -11.65777 -11.27886 -10.91213 -10.68871 -10.48542 -10.20982 -10.04285 -9.83342 -9.35603 -9.16879 -8.60828 -8.32920 -7.26927 -5.98136 -4.01180 1.55984 1.62263 3.25093 3.33879 3.39857 3.43292 4.30916 4.45764 4.47762 4.82119 5.05466 5.37872 5.43215 5.51869 5.55429 5.56642 5.75100 5.86126 5.92855 6.01628 6.17022 6.23115 6.56803 6.72265 6.92734 7.32339 7.36374 7.68408 7.80271 8.01587 8.05958 8.40795 8.79819 9.05763 9.62337 11.13304 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043027 B = 0.006357 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.596337 B = 4403.718807 C = 4690.147448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.211 3.789 3 C -0.312 4.312 4 C 0.194 3.806 5 N -0.559 5.559 6 C 0.572 3.428 7 N -0.578 5.578 8 C 0.104 3.896 9 C 0.130 3.870 10 C 0.015 3.985 11 C -0.518 4.518 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 N -0.580 5.580 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.135 0.865 24 H 0.161 0.839 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 4.375 -7.846 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.062 3.938 3 C -0.339 4.339 4 C 0.025 3.975 5 N -0.281 5.281 6 C 0.217 3.783 7 N -0.292 5.292 8 C -0.040 4.040 9 C 0.009 3.991 10 C -0.024 4.024 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 N -0.305 5.305 20 H 0.098 0.902 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.152 0.848 24 H 0.178 0.822 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.688 3.232 -7.656 14.341 hybrid contribution 0.653 0.847 0.233 1.094 sum -11.035 4.079 -7.424 13.911 Atomic orbital electron populations 1.20713 0.88685 1.03487 1.03024 1.21293 0.96603 0.87835 0.88104 1.22192 0.96431 0.99605 1.15667 1.22901 0.91814 0.95225 0.87553 1.68045 1.40545 0.97871 1.21630 1.19322 0.84612 0.86889 0.87519 1.46545 1.07108 1.01099 1.74426 1.21548 0.96920 0.84800 1.00720 1.21911 0.74256 1.01452 1.01456 1.19390 0.95585 0.97536 0.89852 1.21092 0.91297 1.50846 0.92428 0.92518 1.25000 0.98466 0.95247 0.95586 1.69985 1.35423 1.50673 0.97272 0.86565 0.85671 0.78123 0.77461 1.20626 1.21280 1.19823 1.67707 1.07953 1.30708 1.24107 0.90240 0.90413 0.90488 0.84753 0.82155 0.93726 0.91071 0.90846 0.91861 0.90491 0.96035 0.96863 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.22 36.01 0.37 -0.65 16 2 C 0.21 3.11 6.82 -82.26 -0.56 2.55 16 3 C -0.31 -4.27 9.85 -39.31 -0.39 -4.66 16 4 C 0.19 3.07 11.30 -17.22 -0.19 2.88 16 5 N -0.56 -11.28 9.11 -13.93 -0.13 -11.41 16 6 C 0.57 11.59 8.17 -322.80 -2.64 8.95 16 7 N -0.58 -11.69 2.97 -183.94 -0.55 -12.24 16 8 C 0.10 1.71 10.44 59.85 0.62 2.34 16 9 C 0.13 2.88 5.35 -4.04 -0.02 2.86 16 10 C 0.01 0.39 5.30 -27.89 -0.15 0.24 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 N -0.58 -10.47 9.05 -10.15 -0.09 -10.56 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 24 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 27 H 0.07 1.19 7.33 -51.93 -0.38 0.80 16 28 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.08 1.75 7.33 -51.93 -0.38 1.37 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 279.07 15.07 4.21 4.21 Total: -1.00 -33.48 279.07 -8.73 -42.22 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.52 Total: -3.23 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.37 Total: 0.92 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.03 Total: -60.99 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.48 -8.73 -42.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259373828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.943 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds