Wall clock time and date at job start Mon Mar 30 2020 03:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38627 * 120.39756 * 2 1 4 4 C 1.38587 * 118.55913 * 179.97438 * 3 2 1 5 5 N 1.32293 * 119.19423 * 359.97438 * 4 3 2 6 6 C 1.32479 * 120.74171 * 0.02562 * 5 4 3 7 7 N 1.38413 * 119.21653 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99921 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99876 * 0.02562 * 7 6 5 10 10 C 1.52997 * 109.47029 * 89.99527 * 9 7 6 11 11 C 1.50695 * 109.47172 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00141 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00010 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99946 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47170 * 89.99547 * 15 13 11 17 17 H 1.48496 * 109.47081 * 209.99779 * 15 13 11 18 18 H 1.48499 * 109.47028 * 329.99646 * 15 13 11 19 19 N 1.32258 * 120.40243 * 179.71737 * 2 1 3 20 20 H 1.08999 * 109.47015 * 90.00471 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99623 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00341 * 1 2 3 23 23 H 1.08002 * 120.72588 * 359.95309 * 3 2 1 24 24 H 1.07995 * 120.39993 * 179.97438 * 4 3 2 25 25 H 1.08997 * 109.46855 * 90.00257 * 8 7 6 26 26 H 1.08997 * 109.47078 * 210.00043 * 8 7 6 27 27 H 1.08999 * 109.47275 * 330.00425 * 8 7 6 28 28 H 1.08992 * 109.46872 * 209.99985 * 9 7 6 29 29 H 1.09005 * 109.47085 * 330.00052 * 9 7 6 30 30 H 1.09003 * 109.47258 * 300.00169 * 10 9 7 31 31 H 1.09010 * 109.47196 * 60.00159 * 10 9 7 32 32 H 0.97000 * 119.99484 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1957 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0237 0.0016 6 6 3.5015 -1.1484 0.0015 7 7 4.1700 -2.3604 0.0021 8 6 3.4128 -3.6146 0.0027 9 6 5.6347 -2.3890 0.0032 10 6 6.1435 -2.3988 1.4461 11 6 7.6501 -2.4288 1.4473 12 1 8.1907 -2.4402 0.5124 13 6 8.3384 -2.4428 2.6419 14 7 7.6801 -2.4294 3.7804 15 14 10.2061 -2.4793 2.6434 16 1 10.7284 -1.0892 2.6443 17 1 10.6864 -3.1893 3.8559 18 1 10.6883 -3.1884 1.4310 19 7 2.1764 -1.1407 0.0056 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6869 2.1414 -0.0008 24 1 4.1698 2.0647 0.0001 25 1 3.2251 -3.9260 -1.0249 26 1 3.9869 -4.3853 0.5168 27 1 2.4631 -3.4654 0.5163 28 1 5.9810 -3.2858 -0.5103 29 1 6.0158 -1.5062 -0.5103 30 1 5.7971 -1.5018 1.9596 31 1 5.7624 -3.2815 1.9598 32 1 8.1644 -2.4389 4.6207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259373828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:56 Heat of formation + Delta-G solvation = 31.129805 kcal Electronic energy + Delta-G solvation = -14619.184240 eV Core-core repulsion = 12193.192110 eV Total energy + Delta-G solvation = -2425.992130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.82316 -38.12858 -35.25294 -35.11275 -32.97063 -31.41766 -29.43521 -27.75950 -26.48347 -23.93625 -23.75896 -21.70964 -18.70255 -18.59191 -17.86895 -16.68313 -16.31352 -16.21829 -15.51145 -15.32308 -14.82601 -14.41683 -14.21160 -13.88907 -13.67503 -13.37310 -13.12209 -12.93352 -12.82400 -12.53510 -11.91323 -11.84256 -11.73608 -11.46500 -11.34728 -10.81501 -10.57630 -9.93278 -8.72229 -8.20609 -6.33754 0.34892 0.35895 1.40196 1.42715 1.53703 1.86222 2.41837 3.02147 3.12364 3.32134 3.67116 3.83860 4.29593 4.41995 4.43010 4.52455 4.56610 4.73467 4.79080 4.82380 4.87221 4.94257 4.97735 5.15712 5.41476 5.51155 5.60692 5.75389 5.97059 6.09655 6.22741 6.62813 6.82881 7.35661 7.46354 8.91231 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043027 B = 0.006357 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.596337 B = 4403.718807 C = 4690.147448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.194 3.806 3 C -0.293 4.293 4 C 0.173 3.827 5 N -0.604 5.604 6 C 0.546 3.454 7 N -0.595 5.595 8 C 0.107 3.893 9 C 0.152 3.848 10 C 0.029 3.971 11 C -0.538 4.538 12 H 0.067 0.933 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.258 1.258 19 N -0.593 5.593 20 H 0.099 0.901 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.179 0.821 24 H 0.189 0.811 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.067 0.933 30 H -0.021 1.021 31 H -0.013 1.013 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 5.341 -8.864 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 C -0.318 4.318 4 C 0.007 3.993 5 N -0.327 5.327 6 C 0.191 3.809 7 N -0.311 5.311 8 C -0.036 4.036 9 C 0.029 3.971 10 C -0.009 4.009 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.182 1.182 19 N -0.318 5.318 20 H 0.117 0.883 21 H 0.092 0.908 22 H 0.124 0.876 23 H 0.197 0.803 24 H 0.206 0.794 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.086 0.914 30 H -0.003 1.003 31 H 0.005 0.995 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.280 4.237 -8.695 15.632 hybrid contribution 0.671 0.668 0.564 1.103 sum -11.609 4.906 -8.131 14.998 Atomic orbital electron populations 1.20844 0.85057 1.04762 1.04618 1.22242 0.98908 0.87390 0.86834 1.22671 0.95568 1.01168 1.12401 1.23535 0.93506 0.94923 0.87311 1.67998 1.42213 0.99215 1.23318 1.19542 0.85639 0.86907 0.88834 1.46496 1.06311 1.02402 1.75842 1.21626 0.96374 0.83524 1.02054 1.21419 0.76095 1.01701 0.97843 1.19175 0.95223 0.94067 0.92454 1.21538 0.92349 1.50703 0.93081 0.91488 1.26026 1.04290 0.94477 0.95008 1.70139 1.37815 1.51633 0.98092 0.85357 0.78580 0.78477 0.78071 1.19903 1.20764 1.18174 1.67771 1.06948 1.32500 1.24571 0.88256 0.90776 0.87575 0.80316 0.79420 0.91539 0.91276 0.90854 0.90167 0.91424 1.00295 0.99508 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.22 71.24 0.73 -0.87 16 2 C 0.19 5.33 6.82 42.59 0.29 5.62 16 3 C -0.29 -7.23 9.85 22.45 0.22 -7.01 16 4 C 0.17 5.33 11.30 84.71 0.96 6.29 16 5 N -0.60 -24.84 9.11 -197.99 -1.80 -26.65 16 6 C 0.55 22.53 8.17 261.48 2.14 24.67 16 7 N -0.60 -24.69 2.97 -735.85 -2.19 -26.88 16 8 C 0.11 3.56 10.44 127.77 1.33 4.90 16 9 C 0.15 6.92 5.35 86.38 0.46 7.38 16 10 C 0.03 1.64 5.30 29.85 0.16 1.80 16 11 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 12 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 13 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 14 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 15 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 19 N -0.59 -21.16 9.05 -186.02 -1.68 -22.85 16 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.11 1.18 8.09 -2.39 -0.02 1.16 16 23 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 24 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 27 H 0.07 2.40 7.33 -2.39 -0.02 2.38 16 28 H 0.08 3.31 8.07 -2.39 -0.02 3.29 16 29 H 0.07 3.17 7.33 -2.38 -0.02 3.15 16 30 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 31 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -75.13 279.07 4.71 -70.42 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.09 Total: 5.76 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.98 Total: 11.91 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -5.39 Total: -135.19 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.13 4.71 -70.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259373828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.552 kcal (2) G-P(sol) polarization free energy of solvation -75.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds