Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35251 * 126.06651 * 274.71154 * 10 9 7 12 12 C 1.40430 * 107.86371 * 179.85156 * 11 10 9 13 13 N 1.39984 * 125.97786 * 180.16389 * 12 11 10 14 14 C 1.48533 * 110.99549 * 62.92989 * 13 12 11 15 15 C 1.54935 * 103.22358 * 159.71973 * 14 13 12 16 16 C 1.54599 * 102.92433 * 322.58236 * 15 14 13 17 17 C 1.47904 * 110.99847 * 180.32113 * 13 12 11 18 18 N 1.31226 * 108.04096 * 0.42022 * 12 11 10 19 19 N 1.34956 * 126.07048 * 95.02606 * 10 9 7 20 20 H 0.96999 * 125.96981 * 0.02902 * 19 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07998 * 126.06663 * 0.02562 * 11 10 9 25 25 H 1.09003 * 110.66603 * 278.14723 * 14 13 12 26 26 H 1.08994 * 110.67127 * 41.28559 * 14 13 12 27 27 H 1.09005 * 110.72802 * 204.22156 * 15 14 13 28 28 H 1.09009 * 110.87747 * 81.01185 * 15 14 13 29 29 H 1.08990 * 110.30799 * 263.04301 * 16 15 14 30 30 H 1.09004 * 110.31017 * 140.87333 * 16 15 14 31 31 H 1.08998 * 109.91490 * 333.51456 * 17 13 12 32 32 H 1.09003 * 109.91517 * 94.80543 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.8160 -4.1867 -1.1023 12 6 3.6581 -5.2237 -0.6694 13 7 4.4502 -6.0363 -1.4890 14 6 5.4759 -5.2333 -2.2028 15 6 6.5366 -6.2890 -2.6037 16 6 6.5565 -7.2395 -1.3846 17 6 5.2002 -7.0272 -0.6871 18 7 3.5682 -5.3014 0.6375 19 7 2.6738 -4.3155 1.0733 20 1 2.4176 -4.1451 1.9932 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.6652 -3.8751 -2.1253 25 1 5.0482 -4.7623 -3.0879 26 1 5.9093 -4.4853 -1.5390 27 1 7.5115 -5.8221 -2.7448 28 1 6.2324 -6.8228 -3.5041 29 1 7.3730 -6.9756 -0.7125 30 1 6.6552 -8.2741 -1.7131 31 1 5.3571 -6.6460 0.3219 32 1 4.6504 -7.9677 -0.6502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259529957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = 69.508510 kcal Electronic energy + Delta-G solvation = -14622.746331 eV Core-core repulsion = 12198.418427 eV Total energy + Delta-G solvation = -2424.327905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64750 -38.33860 -33.54338 -32.31795 -30.55342 -28.93005 -28.72303 -26.89518 -23.29024 -22.38242 -20.94714 -19.45233 -19.31055 -16.65966 -16.38434 -15.71078 -15.64370 -14.52796 -14.28433 -13.67567 -12.98252 -12.84640 -12.65173 -12.44432 -12.20281 -11.74818 -11.40675 -11.35006 -11.12905 -10.85322 -10.73612 -10.56254 -10.08434 -9.92758 -9.63863 -9.29622 -8.53744 -7.93321 -7.65176 -6.16006 -4.21006 2.64526 3.26476 3.30757 3.32525 3.38346 3.57276 4.29029 4.36708 4.68308 4.73008 4.99704 5.19444 5.38525 5.49356 5.61540 5.75209 5.79808 5.87168 6.03831 6.05434 6.12342 6.19390 6.50617 6.53138 6.84139 6.96886 7.31900 7.49616 7.72894 7.78964 8.02554 8.20963 8.45468 8.82698 9.43893 10.93857 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042681 B = 0.006273 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.877500 B = 4462.627285 C = 4822.926971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.069 3.931 10 C 0.157 3.843 11 C -0.292 4.292 12 C 0.239 3.761 13 N -0.435 5.435 14 C 0.045 3.955 15 C -0.124 4.124 16 C -0.131 4.131 17 C 0.034 3.966 18 N -0.355 5.355 19 N -0.477 5.477 20 H 0.434 0.566 21 H 0.265 0.735 22 H 0.032 0.968 23 H 0.050 0.950 24 H 0.140 0.860 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -10.052 -2.614 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.031 3.969 10 C 0.028 3.972 11 C -0.322 4.322 12 C -0.018 4.018 13 N -0.157 5.157 14 C -0.082 4.082 15 C -0.162 4.162 16 C -0.170 4.170 17 C -0.093 4.093 18 N -0.183 5.183 19 N -0.185 5.185 20 H 0.278 0.722 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.158 0.842 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.618 -10.820 -1.985 14.612 hybrid contribution 0.422 1.793 0.318 1.869 sum 10.040 -9.027 -1.666 13.604 Atomic orbital electron populations 1.69935 1.06043 1.27277 1.49729 1.24984 0.94906 0.99352 0.94811 0.86530 0.79501 0.82479 0.78802 1.20001 1.21094 1.20207 1.20927 0.93096 0.89524 1.52130 0.92347 1.18107 0.91618 0.87798 0.99399 1.22063 0.95722 0.93421 0.85977 1.20704 1.08191 1.03608 0.99707 1.20765 0.97364 0.94096 0.89550 1.62264 1.19280 1.11565 1.22597 1.23259 0.90954 0.95229 0.98760 1.22507 0.98570 0.96702 0.98409 1.22427 0.97013 1.00264 0.97256 1.22854 0.93142 0.96465 0.96860 1.77098 1.15683 1.14472 1.11090 1.45908 1.37031 1.26789 1.08799 0.72226 0.92537 0.95015 0.93227 0.84221 0.89150 0.92917 0.90821 0.90528 0.91492 0.90983 0.91560 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.04 9.09 -34.44 -0.31 -14.36 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.07 1.72 5.52 -29.03 -0.16 1.56 16 10 C 0.16 3.49 6.39 -82.28 -0.53 2.97 16 11 C -0.29 -6.23 10.51 -39.82 -0.42 -6.64 16 12 C 0.24 4.74 6.39 -154.55 -0.99 3.75 16 13 N -0.43 -7.21 5.39 -168.82 -0.91 -8.12 16 14 C 0.05 0.63 6.34 -1.90 -0.01 0.62 16 15 C -0.12 -1.31 7.06 -24.87 -0.18 -1.49 16 16 C -0.13 -1.41 6.93 -25.37 -0.18 -1.59 16 17 C 0.03 0.49 6.48 -2.76 -0.02 0.47 16 18 N -0.35 -7.19 11.18 31.41 0.35 -6.84 16 19 N -0.48 -9.62 7.35 33.47 0.25 -9.38 16 20 H 0.43 7.59 8.96 -182.62 -1.64 5.95 16 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.80 8.00 -51.93 -0.42 0.38 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.04 6.84 -51.93 -0.36 0.69 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -29.78 271.28 -9.15 -38.93 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.75 Total: 3.09 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.88 Total: -13.10 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.42 Total: -48.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.78 -9.15 -38.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.439 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds