Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35251 * 126.06651 * 274.71154 * 10 9 7 12 12 C 1.40430 * 107.86371 * 179.85156 * 11 10 9 13 13 N 1.39984 * 125.97786 * 180.16389 * 12 11 10 14 14 C 1.48533 * 110.99549 * 62.92989 * 13 12 11 15 15 C 1.54935 * 103.22358 * 159.71973 * 14 13 12 16 16 C 1.54599 * 102.92433 * 322.58236 * 15 14 13 17 17 C 1.47904 * 110.99847 * 180.32113 * 13 12 11 18 18 N 1.31226 * 108.04096 * 0.42022 * 12 11 10 19 19 N 1.34956 * 126.07048 * 95.02606 * 10 9 7 20 20 H 0.96999 * 125.96981 * 0.02902 * 19 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07998 * 126.06663 * 0.02562 * 11 10 9 25 25 H 1.09003 * 110.66603 * 278.14723 * 14 13 12 26 26 H 1.08994 * 110.67127 * 41.28559 * 14 13 12 27 27 H 1.09005 * 110.72802 * 204.22156 * 15 14 13 28 28 H 1.09009 * 110.87747 * 81.01185 * 15 14 13 29 29 H 1.08990 * 110.30799 * 263.04301 * 16 15 14 30 30 H 1.09004 * 110.31017 * 140.87333 * 16 15 14 31 31 H 1.08998 * 109.91490 * 333.51456 * 17 13 12 32 32 H 1.09003 * 109.91517 * 94.80543 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.8160 -4.1867 -1.1023 12 6 3.6581 -5.2237 -0.6694 13 7 4.4502 -6.0363 -1.4890 14 6 5.4759 -5.2333 -2.2028 15 6 6.5366 -6.2890 -2.6037 16 6 6.5565 -7.2395 -1.3846 17 6 5.2002 -7.0272 -0.6871 18 7 3.5682 -5.3014 0.6375 19 7 2.6738 -4.3155 1.0733 20 1 2.4176 -4.1451 1.9932 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.6652 -3.8751 -2.1253 25 1 5.0482 -4.7623 -3.0879 26 1 5.9093 -4.4853 -1.5390 27 1 7.5115 -5.8221 -2.7448 28 1 6.2324 -6.8228 -3.5041 29 1 7.3730 -6.9756 -0.7125 30 1 6.6552 -8.2741 -1.7131 31 1 5.3571 -6.6460 0.3219 32 1 4.6504 -7.9677 -0.6502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259529957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = 50.652070 kcal Electronic energy + Delta-G solvation = -14623.564008 eV Core-core repulsion = 12198.418427 eV Total energy + Delta-G solvation = -2425.145581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22998 -39.54063 -35.52688 -33.72370 -32.33869 -30.22450 -30.00146 -28.70217 -25.27389 -23.61228 -22.04968 -21.01969 -20.69857 -18.62453 -18.15896 -16.99203 -16.83841 -16.39213 -15.75650 -14.95436 -14.57952 -14.40472 -14.19406 -13.96025 -13.55267 -13.30992 -13.12213 -12.68589 -12.58991 -12.26948 -12.09831 -11.88283 -11.69687 -11.59908 -11.41387 -10.81764 -10.63474 -9.56710 -9.19409 -8.25263 -6.38348 0.99838 1.41647 1.43020 1.51581 1.79144 1.96903 2.40588 2.94809 3.07811 3.65325 3.73467 4.07102 4.18576 4.30818 4.33677 4.56407 4.68970 4.77477 4.89275 4.91567 4.96568 5.02654 5.16143 5.23254 5.26096 5.37647 5.45937 5.66735 5.79692 6.02123 6.23154 6.52468 6.70708 6.84455 7.30872 8.84371 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042681 B = 0.006273 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.877500 B = 4462.627285 C = 4822.926971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.080 3.920 10 C 0.143 3.857 11 C -0.302 4.302 12 C 0.242 3.758 13 N -0.443 5.443 14 C 0.038 3.962 15 C -0.113 4.113 16 C -0.124 4.124 17 C 0.030 3.970 18 N -0.357 5.357 19 N -0.473 5.473 20 H 0.444 0.556 21 H 0.268 0.732 22 H 0.021 0.979 23 H 0.031 0.969 24 H 0.142 0.858 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.649 -10.481 -3.195 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.041 3.959 10 C 0.013 3.987 11 C -0.332 4.332 12 C -0.015 4.015 13 N -0.165 5.165 14 C -0.088 4.088 15 C -0.151 4.151 16 C -0.162 4.162 17 C -0.098 4.098 18 N -0.186 5.186 19 N -0.183 5.183 20 H 0.289 0.711 21 H 0.077 0.923 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.160 0.840 25 H 0.110 0.890 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.552 -11.263 -2.555 16.335 hybrid contribution -0.184 1.849 0.477 1.918 sum 11.368 -9.414 -2.078 14.906 Atomic orbital electron populations 1.70038 1.07476 1.28341 1.50363 1.25808 0.95720 1.02809 0.94190 0.85499 0.78321 0.78196 0.79047 1.19365 1.20369 1.19545 1.21172 0.92984 0.90783 1.52308 0.92907 1.17812 0.91715 0.88431 0.97895 1.21678 0.96233 0.93560 0.87181 1.20850 1.08492 1.04195 0.99651 1.21034 0.97257 0.93688 0.89505 1.62326 1.20268 1.11696 1.22238 1.23399 0.91336 0.95964 0.98143 1.22522 0.98346 0.95549 0.98679 1.22432 0.94914 1.01730 0.97090 1.22970 0.95028 0.95642 0.96121 1.77112 1.15593 1.14396 1.11500 1.45906 1.36890 1.26551 1.08953 0.71111 0.92256 0.96097 0.95128 0.84026 0.88977 0.94382 0.88562 0.89254 0.90484 0.88667 0.93371 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.05 13.29 21.45 0.28 -52.77 16 2 C 0.01 0.78 5.46 84.66 0.46 1.24 16 3 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.53 -29.32 9.09 25.60 0.23 -29.09 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.08 4.10 5.52 29.10 0.16 4.26 16 10 C 0.14 6.46 6.39 41.39 0.26 6.73 16 11 C -0.30 -12.97 10.51 22.11 0.23 -12.73 16 12 C 0.24 9.53 6.39 133.39 0.85 10.38 16 13 N -0.44 -14.14 5.39 -688.02 -3.71 -17.85 16 14 C 0.04 1.01 6.34 86.65 0.55 1.56 16 15 C -0.11 -2.01 7.06 31.80 0.22 -1.79 16 16 C -0.12 -2.25 6.93 31.47 0.22 -2.03 16 17 C 0.03 0.79 6.48 86.44 0.56 1.35 16 18 N -0.36 -14.37 11.18 -54.55 -0.61 -14.98 16 19 N -0.47 -19.22 7.35 -48.03 -0.35 -19.57 16 20 H 0.44 15.63 8.96 -213.34 -1.91 13.71 16 21 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 22 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.14 5.89 8.06 -2.91 -0.02 5.87 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.46 6.84 -2.39 -0.02 1.44 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.02 271.28 0.60 -62.42 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.80 Total: 18.05 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.76 Total: -20.13 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -4.39 Total: -105.16 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -63.02 0.60 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.077 kcal (2) G-P(sol) polarization free energy of solvation -63.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds