Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.73542 * 54.32442 * 11 10 9 13 13 N 1.47302 * 109.74729 * 293.59531 * 11 10 9 14 14 C 1.46884 * 111.72621 * 188.27093 * 13 11 10 15 15 C 1.53545 * 109.85513 * 73.07481 * 14 13 11 16 16 C 1.50943 * 107.63877 * 310.20940 * 15 14 13 17 17 C 1.34288 * 129.20153 * 196.05787 * 16 15 14 18 18 N 1.35272 * 107.58198 * 179.63678 * 17 16 15 19 19 H 0.96994 * 126.00347 * 180.02562 * 18 17 16 20 20 N 1.40384 * 108.00674 * 0.05117 * 18 17 16 21 21 C 1.29921 * 108.11938 * 0.04640 * 20 18 17 22 22 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 24 24 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 25 25 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 26 26 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 27 27 H 1.00903 * 110.99893 * 312.76678 * 13 11 10 28 28 H 1.08997 * 109.41663 * 312.94812 * 14 13 11 29 29 H 1.08997 * 109.33193 * 193.14863 * 14 13 11 30 30 H 1.09001 * 109.82656 * 190.67985 * 15 14 13 31 31 H 1.08993 * 109.82868 * 69.74677 * 15 14 13 32 32 H 1.08002 * 126.21104 * 359.63633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 1 5.9198 -2.0381 0.8344 13 7 6.0493 -2.0814 -1.2695 14 6 7.5039 -2.2390 -1.3990 15 6 7.8463 -3.7095 -1.6783 16 6 7.1211 -4.5502 -0.6557 17 6 7.3267 -5.8315 -0.3105 18 7 6.4341 -6.1422 0.6573 19 1 6.3482 -7.0014 1.0991 20 7 5.6534 -5.0031 0.9096 21 6 6.0616 -4.0516 0.1247 22 1 -0.4850 0.8400 -0.0004 23 1 3.8753 -0.6803 -0.8889 24 1 3.8746 -0.6799 0.8911 25 1 3.6579 -3.1505 0.8908 26 1 3.6587 -3.1502 -0.8892 27 1 5.5694 -2.4924 -2.0563 28 1 7.9863 -1.9242 -0.4737 29 1 7.8619 -1.6210 -2.2224 30 1 8.9217 -3.8625 -1.5871 31 1 7.5172 -3.9817 -2.6811 32 1 8.0698 -6.4938 -0.7295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259533735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = 64.929705 kcal Electronic energy + Delta-G solvation = -14832.626299 eV Core-core repulsion = 12408.099842 eV Total energy + Delta-G solvation = -2424.526457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40778 -37.34247 -34.03101 -32.34792 -31.01168 -30.39012 -28.28947 -25.94692 -23.37906 -22.46709 -20.87224 -19.73348 -19.14486 -17.62285 -16.57577 -15.12691 -14.94419 -14.81311 -14.52703 -14.04339 -13.34527 -13.00207 -12.93158 -12.43221 -12.25493 -11.92296 -11.64542 -11.15777 -10.91992 -10.80020 -10.35636 -9.89061 -9.63366 -9.57342 -9.19544 -8.99093 -8.46692 -8.39577 -8.20897 -5.90880 -3.87496 1.95341 2.80507 2.90733 3.43815 3.49874 3.57247 4.46757 4.59426 4.61642 4.73414 5.08954 5.22340 5.37217 5.44522 5.56386 5.68970 5.79297 5.90658 6.00983 6.05587 6.13253 6.54858 6.65609 6.75658 7.06609 7.23559 7.33944 7.52920 7.62386 7.69088 7.82308 7.96069 8.68844 9.15152 9.72680 11.22872 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041992 B = 0.007044 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.640614 B = 3973.804633 C = 4470.882579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.292 1.292 7 C -0.517 4.517 8 H 0.069 0.931 9 C -0.008 4.008 10 C -0.089 4.089 11 C 0.166 3.834 12 H 0.097 0.903 13 N -0.667 5.667 14 C 0.058 3.942 15 C -0.076 4.076 16 C -0.246 4.246 17 C 0.057 3.943 18 N -0.493 5.493 19 H 0.436 0.564 20 N -0.271 5.271 21 C 0.057 3.943 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.013 0.987 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.346 0.654 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.262 -9.838 -2.561 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.136 4.136 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.218 1.218 7 C -0.555 4.555 8 H 0.087 0.913 9 C -0.045 4.045 10 C -0.128 4.128 11 C 0.053 3.947 12 H 0.115 0.885 13 N -0.295 5.295 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.258 4.258 17 C -0.089 4.089 18 N -0.201 5.201 19 H 0.279 0.721 20 N -0.092 5.092 21 C -0.115 4.115 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.165 0.835 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.340 -9.393 -1.415 19.771 hybrid contribution 1.032 -0.621 -0.586 1.339 sum 18.371 -10.015 -2.001 21.019 Atomic orbital electron populations 1.69934 1.06365 1.26689 1.51888 1.25028 0.94689 0.99199 0.94717 0.86737 0.80382 0.83436 0.78493 1.20337 1.18780 1.21796 1.21221 0.89899 0.94284 1.50123 0.91333 1.19516 0.96336 0.91701 0.96947 1.21519 0.88870 1.00689 1.01687 1.20542 0.97418 0.83827 0.92879 0.88519 1.60737 1.03828 1.60689 1.04289 1.22096 0.89356 0.93506 1.02276 1.20751 0.99019 0.95696 0.96197 1.20133 1.03937 0.94970 1.06721 1.21872 0.96281 0.96985 0.93730 1.46510 1.28095 1.13016 1.32500 0.72083 1.77072 1.16076 0.92776 1.23274 1.23744 0.95211 0.98151 0.94360 0.92957 0.95606 0.96826 0.91553 0.92869 0.83528 0.91054 0.90292 0.91136 0.91328 0.81132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.94 13.96 55.43 0.77 -28.16 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.56 27.47 -169.99 -4.67 17.90 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.19 3.94 -27.88 -0.11 -0.30 16 10 C -0.09 -1.87 4.67 -26.73 -0.12 -2.00 16 11 C 0.17 2.88 2.83 -68.53 -0.19 2.69 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 13 N -0.67 -10.33 6.09 -107.24 -0.65 -10.98 16 14 C 0.06 0.69 6.51 -3.55 -0.02 0.67 16 15 C -0.08 -0.82 6.42 -27.48 -0.18 -0.99 16 16 C -0.25 -3.26 5.96 -104.96 -0.63 -3.88 16 17 C 0.06 0.62 11.96 -17.43 -0.21 0.41 16 18 N -0.49 -6.01 7.38 30.31 0.22 -5.78 16 19 H 0.44 3.73 8.96 -182.39 -1.63 2.09 16 20 N -0.27 -4.54 12.57 33.76 0.42 -4.11 16 21 C 0.06 0.94 6.52 -82.35 -0.54 0.40 16 22 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 23 H 0.03 0.63 7.24 -51.93 -0.38 0.25 16 24 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 25 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 26 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 27 H 0.35 5.25 8.53 -39.29 -0.34 4.92 16 28 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -34.10 265.24 -8.01 -42.11 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.68 Total: 1.82 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.43 Total: -16.78 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.77 Total: -49.04 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.10 -8.01 -42.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.039 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds