Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48496 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46881 * 299.99804 * 3 2 1 6 6 H 1.48506 * 109.47085 * 59.99301 * 3 2 1 7 7 C 1.37879 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00534 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99742 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.52106 * 59.87537 * 9 7 2 11 11 C 1.53120 * 109.57450 * 299.71601 * 9 7 2 12 12 C 1.53042 * 109.27679 * 182.40822 * 11 9 7 13 13 N 1.46846 * 109.52384 * 59.17688 * 12 11 9 14 14 C 1.46850 * 111.19870 * 298.26168 * 13 12 11 15 15 H 1.08995 * 109.45831 * 301.71808 * 14 13 12 16 16 C 1.50702 * 109.45844 * 181.75489 * 14 13 12 17 17 C 1.39867 * 126.04256 * 319.63528 * 16 14 13 18 18 N 1.30838 * 108.20195 * 179.81764 * 17 16 14 19 19 N 1.40082 * 108.20589 * 0.44066 * 18 17 16 20 20 H 0.97002 * 126.03811 * 179.69899 * 19 18 17 21 21 C 1.34953 * 107.92524 * 359.71667 * 19 18 17 22 22 C 1.53036 * 109.52384 * 61.74019 * 14 13 12 23 23 H 0.97003 * 120.00122 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.50493 * 302.34565 * 11 9 7 25 25 H 1.09005 * 109.50270 * 62.47136 * 11 9 7 26 26 H 1.08993 * 109.46230 * 179.19773 * 12 11 9 27 27 H 1.09006 * 109.46257 * 299.17228 * 12 11 9 28 28 H 1.00899 * 111.00179 * 174.16197 * 13 12 11 29 29 H 1.08003 * 125.89706 * 0.02562 * 17 16 14 30 30 H 1.07998 * 126.12468 * 180.02562 * 21 19 18 31 31 H 1.09004 * 109.50109 * 60.76189 * 22 14 13 32 32 H 1.08996 * 109.49818 * 180.83779 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6227 -2.5570 -0.8883 11 6 0.3747 -2.5856 1.2532 12 6 -0.3410 -3.9381 1.2768 13 7 0.6527 -5.0193 1.2772 14 6 1.4751 -4.9851 0.0610 15 1 0.8319 -5.0707 -0.8147 16 6 2.4502 -6.1339 0.0819 17 6 3.1580 -6.5924 1.1977 18 7 3.8988 -7.6042 0.8244 19 7 3.6930 -7.8155 -0.5451 20 1 4.1176 -8.4986 -1.0873 21 6 2.8000 -6.9005 -0.9769 22 6 2.2450 -3.6638 0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 0.9990 -2.4887 2.1414 25 1 -0.3634 -1.7836 1.2370 26 1 -0.9548 -4.0086 2.1747 27 1 -0.9756 -4.0287 0.3951 28 1 0.2087 -5.9185 1.3883 29 1 3.1003 -6.1840 2.1959 30 1 2.4304 -6.7987 -1.9866 31 1 2.8987 -3.5839 0.8698 32 1 2.8438 -3.6326 -0.9090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259535432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 64.519488 kcal Electronic energy + Delta-G solvation = -14991.486286 eV Core-core repulsion = 12566.942041 eV Total energy + Delta-G solvation = -2424.544245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96139 -37.60132 -33.34293 -31.59162 -30.90287 -30.41065 -27.89997 -25.27662 -22.36980 -21.83455 -21.49415 -19.69387 -18.56096 -17.51756 -16.09924 -15.33300 -14.54374 -14.33285 -14.23735 -13.72249 -13.25277 -12.71151 -12.44502 -12.37228 -12.15145 -11.50747 -10.93288 -10.75924 -10.62469 -10.47050 -10.12789 -9.94450 -9.45027 -9.36923 -9.07352 -8.67663 -8.27797 -8.16015 -7.72319 -5.93447 -3.98351 2.08109 3.06894 3.08649 3.32922 3.41057 3.45619 4.48630 4.77761 5.11503 5.21671 5.36999 5.69495 5.81798 5.97889 6.04097 6.24206 6.32036 6.34547 6.66045 6.70267 6.87558 6.96772 7.17023 7.24397 7.42074 7.54878 7.68430 7.83079 7.90914 8.03481 8.14962 8.22585 8.53653 9.05806 9.65922 11.12679 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.007130 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.275841 B = 3926.333066 C = 4305.950351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.019 0.981 11 C -0.106 4.106 12 C 0.059 3.941 13 N -0.681 5.681 14 C 0.165 3.835 15 H 0.032 0.968 16 C -0.215 4.215 17 C 0.078 3.922 18 N -0.310 5.310 19 N -0.486 5.486 20 H 0.434 0.566 21 C 0.049 3.951 22 C -0.092 4.092 23 H 0.258 0.742 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.325 0.675 29 H 0.186 0.814 30 H 0.172 0.828 31 H 0.056 0.944 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -12.136 -1.254 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.038 0.962 11 C -0.144 4.144 12 C -0.070 4.070 13 N -0.311 5.311 14 C 0.054 3.946 15 H 0.050 0.950 16 C -0.227 4.227 17 C -0.109 4.109 18 N -0.133 5.133 19 N -0.194 5.194 20 H 0.277 0.723 21 C -0.098 4.098 22 C -0.130 4.130 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.141 0.859 29 H 0.202 0.798 30 H 0.189 0.811 31 H 0.075 0.925 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.063 -12.503 -0.500 12.882 hybrid contribution -0.608 0.897 -1.295 1.688 sum 2.455 -11.606 -1.794 11.998 Atomic orbital electron populations 1.69888 1.05850 1.26123 1.51343 1.24961 0.94821 0.98962 0.95288 0.86598 0.80226 0.84068 0.77476 1.19848 1.21183 1.21077 1.21252 0.92924 0.90663 1.49764 0.92742 1.18704 0.92733 0.91699 0.93987 0.96246 1.21662 1.00127 0.93285 0.99333 1.22095 0.92846 0.93609 0.98405 1.60328 1.25989 1.06041 1.38751 1.19792 0.91687 0.92532 0.90600 0.94974 1.20301 1.06769 1.02830 0.92802 1.23806 0.93565 0.93116 1.00394 1.77285 1.24701 1.20674 0.90626 1.46218 1.36399 1.28648 1.08179 0.72303 1.22336 0.94954 0.92490 1.00061 1.21679 0.98476 0.92564 1.00271 0.93209 0.93837 0.89164 0.92609 0.96408 0.85894 0.79752 0.81108 0.92499 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.37 55.43 0.63 -24.82 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 10 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 11 C -0.11 -2.49 5.12 -26.65 -0.14 -2.62 16 12 C 0.06 1.13 6.55 -3.83 -0.03 1.11 16 13 N -0.68 -11.72 6.25 -107.98 -0.68 -12.40 16 14 C 0.16 2.89 2.86 -68.87 -0.20 2.69 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C -0.22 -3.31 5.00 -105.05 -0.52 -3.84 16 17 C 0.08 1.21 11.67 -17.37 -0.20 1.00 16 18 N -0.31 -4.68 12.70 30.62 0.39 -4.29 16 19 N -0.49 -5.87 7.36 30.45 0.22 -5.65 16 20 H 0.43 3.62 8.96 -182.61 -1.64 1.98 16 21 C 0.05 0.62 11.90 -17.22 -0.20 0.42 16 22 C -0.09 -1.94 4.58 -26.65 -0.12 -2.06 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.32 4.88 8.78 -39.29 -0.35 4.54 16 29 H 0.19 2.71 8.06 -52.48 -0.42 2.29 16 30 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -30.15 265.33 -8.10 -38.25 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.65 Total: 3.58 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.00 Total: -15.06 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.57 Total: -47.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.15 -8.10 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.772 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds