Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48496 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46881 * 299.99804 * 3 2 1 6 6 H 1.48506 * 109.47085 * 59.99301 * 3 2 1 7 7 C 1.37879 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00534 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99742 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.52106 * 59.87537 * 9 7 2 11 11 C 1.53120 * 109.57450 * 299.71601 * 9 7 2 12 12 C 1.53042 * 109.27679 * 182.40822 * 11 9 7 13 13 N 1.46846 * 109.52384 * 59.17688 * 12 11 9 14 14 C 1.46850 * 111.19870 * 298.26168 * 13 12 11 15 15 H 1.08995 * 109.45831 * 301.71808 * 14 13 12 16 16 C 1.50702 * 109.45844 * 181.75489 * 14 13 12 17 17 C 1.39867 * 126.04256 * 319.63528 * 16 14 13 18 18 N 1.30838 * 108.20195 * 179.81764 * 17 16 14 19 19 N 1.40082 * 108.20589 * 0.44066 * 18 17 16 20 20 H 0.97002 * 126.03811 * 179.69899 * 19 18 17 21 21 C 1.34953 * 107.92524 * 359.71667 * 19 18 17 22 22 C 1.53036 * 109.52384 * 61.74019 * 14 13 12 23 23 H 0.97003 * 120.00122 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.50493 * 302.34565 * 11 9 7 25 25 H 1.09005 * 109.50270 * 62.47136 * 11 9 7 26 26 H 1.08993 * 109.46230 * 179.19773 * 12 11 9 27 27 H 1.09006 * 109.46257 * 299.17228 * 12 11 9 28 28 H 1.00899 * 111.00179 * 174.16197 * 13 12 11 29 29 H 1.08003 * 125.89706 * 0.02562 * 17 16 14 30 30 H 1.07998 * 126.12468 * 180.02562 * 21 19 18 31 31 H 1.09004 * 109.50109 * 60.76189 * 22 14 13 32 32 H 1.08996 * 109.49818 * 180.83779 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6227 -2.5570 -0.8883 11 6 0.3747 -2.5856 1.2532 12 6 -0.3410 -3.9381 1.2768 13 7 0.6527 -5.0193 1.2772 14 6 1.4751 -4.9851 0.0610 15 1 0.8319 -5.0707 -0.8147 16 6 2.4502 -6.1339 0.0819 17 6 3.1580 -6.5924 1.1977 18 7 3.8988 -7.6042 0.8244 19 7 3.6930 -7.8155 -0.5451 20 1 4.1176 -8.4986 -1.0873 21 6 2.8000 -6.9005 -0.9769 22 6 2.2450 -3.6638 0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 0.9990 -2.4887 2.1414 25 1 -0.3634 -1.7836 1.2370 26 1 -0.9548 -4.0086 2.1747 27 1 -0.9756 -4.0287 0.3951 28 1 0.2087 -5.9185 1.3883 29 1 3.1003 -6.1840 2.1959 30 1 2.4304 -6.7987 -1.9866 31 1 2.8987 -3.5839 0.8698 32 1 2.8438 -3.6326 -0.9090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259535432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 43.296652 kcal Electronic energy + Delta-G solvation = -14992.406577 eV Core-core repulsion = 12566.942041 eV Total energy + Delta-G solvation = -2425.464536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06336 -39.21283 -35.25963 -32.96506 -32.33581 -32.00956 -29.28079 -27.27001 -23.87063 -23.43133 -22.77945 -20.92856 -20.24262 -18.83734 -18.03893 -16.87352 -16.42417 -15.55207 -15.42780 -15.05013 -14.81234 -14.48972 -14.25493 -13.93004 -13.53328 -13.01557 -12.84874 -12.65068 -12.32909 -12.08879 -11.93538 -11.56704 -11.34287 -10.85903 -10.61912 -10.48267 -10.35012 -9.36454 -9.16592 -8.05107 -6.18019 1.03649 1.40705 1.43033 1.54117 1.90553 2.15664 2.45985 3.21380 3.42488 3.98738 4.19303 4.39883 4.47401 4.52645 4.59235 4.75215 4.82846 4.93026 5.00046 5.17582 5.24704 5.28959 5.41810 5.63685 5.70301 5.74471 6.07875 6.08942 6.38328 6.45801 6.53332 6.75993 6.83458 6.94673 7.49468 8.99224 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.007130 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.275841 B = 3926.333066 C = 4305.950351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.046 0.954 9 C 0.044 3.956 10 H -0.009 1.009 11 C -0.098 4.098 12 C 0.070 3.930 13 N -0.677 5.677 14 C 0.177 3.823 15 H 0.035 0.965 16 C -0.244 4.244 17 C 0.069 3.931 18 N -0.332 5.332 19 N -0.470 5.470 20 H 0.452 0.548 21 C 0.073 3.927 22 C -0.081 4.081 23 H 0.260 0.740 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.016 0.984 28 H 0.344 0.656 29 H 0.184 0.816 30 H 0.207 0.793 31 H 0.042 0.958 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -13.387 -1.811 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.025 3.975 10 H 0.010 0.990 11 C -0.137 4.137 12 C -0.059 4.059 13 N -0.310 5.310 14 C 0.066 3.934 15 H 0.053 0.947 16 C -0.255 4.255 17 C -0.117 4.117 18 N -0.155 5.155 19 N -0.179 5.179 20 H 0.299 0.701 21 C -0.076 4.076 22 C -0.120 4.120 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.034 0.966 28 H 0.163 0.837 29 H 0.201 0.799 30 H 0.223 0.777 31 H 0.061 0.939 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.534 -13.796 -1.055 14.280 hybrid contribution -0.727 1.257 -1.169 1.864 sum 2.807 -12.539 -2.224 13.040 Atomic orbital electron populations 1.70013 1.07016 1.26921 1.51709 1.25695 0.95671 1.02152 0.94962 0.85634 0.79054 0.80101 0.77637 1.19485 1.20541 1.20596 1.21612 0.92850 0.92439 1.50067 0.93521 1.18680 0.93178 0.92367 0.93238 0.99045 1.21442 0.99117 0.95195 0.97920 1.21873 0.92780 0.91858 0.99394 1.60203 1.25512 1.06467 1.38774 1.19509 0.91760 0.91417 0.90707 0.94738 1.20094 1.07893 1.03531 0.94026 1.23841 0.93815 0.93387 1.00632 1.77247 1.25185 1.20883 0.92193 1.46247 1.35644 1.28599 1.07440 0.70147 1.22786 0.93270 0.90842 1.00749 1.21497 0.97613 0.93402 0.99459 0.93097 0.95357 0.92199 0.90535 0.96553 0.83709 0.79945 0.77651 0.93906 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 11.37 21.45 0.24 -53.05 16 2 C 0.01 0.76 5.31 84.66 0.45 1.21 16 3 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.53 -30.01 8.56 25.60 0.22 -29.79 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 10 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 11 C -0.10 -4.72 5.12 30.65 0.16 -4.56 16 12 C 0.07 2.63 6.55 86.33 0.57 3.20 16 13 N -0.68 -22.35 6.25 -495.56 -3.10 -25.45 16 14 C 0.18 5.98 2.86 44.19 0.13 6.10 16 15 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 16 C -0.24 -6.98 5.00 -20.14 -0.10 -7.08 16 17 C 0.07 2.04 11.67 85.24 0.99 3.03 16 18 N -0.33 -9.33 12.70 -57.02 -0.72 -10.05 16 19 N -0.47 -9.85 7.36 -57.59 -0.42 -10.27 16 20 H 0.45 5.94 8.96 -213.33 -1.91 4.03 16 21 C 0.07 1.60 11.90 83.54 0.99 2.59 16 22 C -0.08 -3.45 4.58 30.64 0.14 -3.31 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 3.23 6.17 -2.38 -0.01 3.22 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.34 9.52 8.78 -89.69 -0.79 8.73 16 29 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 30 H 0.21 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -65.40 265.33 -0.03 -65.42 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -1.57 Total: 13.46 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.52 Total: -26.40 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.00 Total: -98.82 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.40 -0.03 -65.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.717 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds